Source file src/google.golang.org/genproto/googleapis/genomics/v1/reads.pb.go

Documentation: google.golang.org/genproto/googleapis/genomics/v1

     1  // Copyright 2024 Google LLC
     2  //
     3  // Licensed under the Apache License, Version 2.0 (the "License");
     4  // you may not use this file except in compliance with the License.
     5  // You may obtain a copy of the License at
     6  //
     7  //     http://www.apache.org/licenses/LICENSE-2.0
     8  //
     9  // Unless required by applicable law or agreed to in writing, software
    10  // distributed under the License is distributed on an "AS IS" BASIS,
    11  // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
    12  // See the License for the specific language governing permissions and
    13  // limitations under the License.
    14  
    15  // Code generated by protoc-gen-go. DO NOT EDIT.
    16  // versions:
    17  // 	protoc-gen-go v1.26.0
    18  // 	protoc        v4.24.4
    19  // source: google/genomics/v1/reads.proto
    20  
    21  package genomics
    22  
    23  import (
    24  	context "context"
    25  	reflect "reflect"
    26  	sync "sync"
    27  
    28  	longrunningpb "cloud.google.com/go/longrunning/autogen/longrunningpb"
    29  	_ "google.golang.org/genproto/googleapis/api/annotations"
    30  	grpc "google.golang.org/grpc"
    31  	codes "google.golang.org/grpc/codes"
    32  	status "google.golang.org/grpc/status"
    33  	protoreflect "google.golang.org/protobuf/reflect/protoreflect"
    34  	protoimpl "google.golang.org/protobuf/runtime/protoimpl"
    35  	emptypb "google.golang.org/protobuf/types/known/emptypb"
    36  	fieldmaskpb "google.golang.org/protobuf/types/known/fieldmaskpb"
    37  )
    38  
    39  const (
    40  	// Verify that this generated code is sufficiently up-to-date.
    41  	_ = protoimpl.EnforceVersion(20 - protoimpl.MinVersion)
    42  	// Verify that runtime/protoimpl is sufficiently up-to-date.
    43  	_ = protoimpl.EnforceVersion(protoimpl.MaxVersion - 20)
    44  )
    45  
    46  type ImportReadGroupSetsRequest_PartitionStrategy int32
    47  
    48  const (
    49  	ImportReadGroupSetsRequest_PARTITION_STRATEGY_UNSPECIFIED ImportReadGroupSetsRequest_PartitionStrategy = 0
    50  	// In most cases, this strategy yields one read group set per file. This is
    51  	// the default behavior.
    52  	//
    53  	// Allocate one read group set per file per sample. For BAM files, read
    54  	// groups are considered to share a sample if they have identical sample
    55  	// names. Furthermore, all reads for each file which do not belong to a read
    56  	// group, if any, will be grouped into a single read group set per-file.
    57  	ImportReadGroupSetsRequest_PER_FILE_PER_SAMPLE ImportReadGroupSetsRequest_PartitionStrategy = 1
    58  	// Includes all read groups in all imported files into a single read group
    59  	// set. Requires that the headers for all imported files are equivalent. All
    60  	// reads which do not belong to a read group, if any, will be grouped into a
    61  	// separate read group set.
    62  	ImportReadGroupSetsRequest_MERGE_ALL ImportReadGroupSetsRequest_PartitionStrategy = 2
    63  )
    64  
    65  // Enum value maps for ImportReadGroupSetsRequest_PartitionStrategy.
    66  var (
    67  	ImportReadGroupSetsRequest_PartitionStrategy_name = map[int32]string{
    68  		0: "PARTITION_STRATEGY_UNSPECIFIED",
    69  		1: "PER_FILE_PER_SAMPLE",
    70  		2: "MERGE_ALL",
    71  	}
    72  	ImportReadGroupSetsRequest_PartitionStrategy_value = map[string]int32{
    73  		"PARTITION_STRATEGY_UNSPECIFIED": 0,
    74  		"PER_FILE_PER_SAMPLE":            1,
    75  		"MERGE_ALL":                      2,
    76  	}
    77  )
    78  
    79  func (x ImportReadGroupSetsRequest_PartitionStrategy) Enum() *ImportReadGroupSetsRequest_PartitionStrategy {
    80  	p := new(ImportReadGroupSetsRequest_PartitionStrategy)
    81  	*p = x
    82  	return p
    83  }
    84  
    85  func (x ImportReadGroupSetsRequest_PartitionStrategy) String() string {
    86  	return protoimpl.X.EnumStringOf(x.Descriptor(), protoreflect.EnumNumber(x))
    87  }
    88  
    89  func (ImportReadGroupSetsRequest_PartitionStrategy) Descriptor() protoreflect.EnumDescriptor {
    90  	return file_google_genomics_v1_reads_proto_enumTypes[0].Descriptor()
    91  }
    92  
    93  func (ImportReadGroupSetsRequest_PartitionStrategy) Type() protoreflect.EnumType {
    94  	return &file_google_genomics_v1_reads_proto_enumTypes[0]
    95  }
    96  
    97  func (x ImportReadGroupSetsRequest_PartitionStrategy) Number() protoreflect.EnumNumber {
    98  	return protoreflect.EnumNumber(x)
    99  }
   100  
   101  // Deprecated: Use ImportReadGroupSetsRequest_PartitionStrategy.Descriptor instead.
   102  func (ImportReadGroupSetsRequest_PartitionStrategy) EnumDescriptor() ([]byte, []int) {
   103  	return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{2, 0}
   104  }
   105  
   106  // The read group set search request.
   107  type SearchReadGroupSetsRequest struct {
   108  	state         protoimpl.MessageState
   109  	sizeCache     protoimpl.SizeCache
   110  	unknownFields protoimpl.UnknownFields
   111  
   112  	// Restricts this query to read group sets within the given datasets. At least
   113  	// one ID must be provided.
   114  	DatasetIds []string `protobuf:"bytes,1,rep,name=dataset_ids,json=datasetIds,proto3" json:"dataset_ids,omitempty"`
   115  	// Only return read group sets for which a substring of the name matches this
   116  	// string.
   117  	Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
   118  	// The continuation token, which is used to page through large result sets.
   119  	// To get the next page of results, set this parameter to the value of
   120  	// `nextPageToken` from the previous response.
   121  	PageToken string `protobuf:"bytes,2,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
   122  	// The maximum number of results to return in a single page. If unspecified,
   123  	// defaults to 256. The maximum value is 1024.
   124  	PageSize int32 `protobuf:"varint,4,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
   125  }
   126  
   127  func (x *SearchReadGroupSetsRequest) Reset() {
   128  	*x = SearchReadGroupSetsRequest{}
   129  	if protoimpl.UnsafeEnabled {
   130  		mi := &file_google_genomics_v1_reads_proto_msgTypes[0]
   131  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   132  		ms.StoreMessageInfo(mi)
   133  	}
   134  }
   135  
   136  func (x *SearchReadGroupSetsRequest) String() string {
   137  	return protoimpl.X.MessageStringOf(x)
   138  }
   139  
   140  func (*SearchReadGroupSetsRequest) ProtoMessage() {}
   141  
   142  func (x *SearchReadGroupSetsRequest) ProtoReflect() protoreflect.Message {
   143  	mi := &file_google_genomics_v1_reads_proto_msgTypes[0]
   144  	if protoimpl.UnsafeEnabled && x != nil {
   145  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   146  		if ms.LoadMessageInfo() == nil {
   147  			ms.StoreMessageInfo(mi)
   148  		}
   149  		return ms
   150  	}
   151  	return mi.MessageOf(x)
   152  }
   153  
   154  // Deprecated: Use SearchReadGroupSetsRequest.ProtoReflect.Descriptor instead.
   155  func (*SearchReadGroupSetsRequest) Descriptor() ([]byte, []int) {
   156  	return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{0}
   157  }
   158  
   159  func (x *SearchReadGroupSetsRequest) GetDatasetIds() []string {
   160  	if x != nil {
   161  		return x.DatasetIds
   162  	}
   163  	return nil
   164  }
   165  
   166  func (x *SearchReadGroupSetsRequest) GetName() string {
   167  	if x != nil {
   168  		return x.Name
   169  	}
   170  	return ""
   171  }
   172  
   173  func (x *SearchReadGroupSetsRequest) GetPageToken() string {
   174  	if x != nil {
   175  		return x.PageToken
   176  	}
   177  	return ""
   178  }
   179  
   180  func (x *SearchReadGroupSetsRequest) GetPageSize() int32 {
   181  	if x != nil {
   182  		return x.PageSize
   183  	}
   184  	return 0
   185  }
   186  
   187  // The read group set search response.
   188  type SearchReadGroupSetsResponse struct {
   189  	state         protoimpl.MessageState
   190  	sizeCache     protoimpl.SizeCache
   191  	unknownFields protoimpl.UnknownFields
   192  
   193  	// The list of matching read group sets.
   194  	ReadGroupSets []*ReadGroupSet `protobuf:"bytes,1,rep,name=read_group_sets,json=readGroupSets,proto3" json:"read_group_sets,omitempty"`
   195  	// The continuation token, which is used to page through large result sets.
   196  	// Provide this value in a subsequent request to return the next page of
   197  	// results. This field will be empty if there aren't any additional results.
   198  	NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
   199  }
   200  
   201  func (x *SearchReadGroupSetsResponse) Reset() {
   202  	*x = SearchReadGroupSetsResponse{}
   203  	if protoimpl.UnsafeEnabled {
   204  		mi := &file_google_genomics_v1_reads_proto_msgTypes[1]
   205  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   206  		ms.StoreMessageInfo(mi)
   207  	}
   208  }
   209  
   210  func (x *SearchReadGroupSetsResponse) String() string {
   211  	return protoimpl.X.MessageStringOf(x)
   212  }
   213  
   214  func (*SearchReadGroupSetsResponse) ProtoMessage() {}
   215  
   216  func (x *SearchReadGroupSetsResponse) ProtoReflect() protoreflect.Message {
   217  	mi := &file_google_genomics_v1_reads_proto_msgTypes[1]
   218  	if protoimpl.UnsafeEnabled && x != nil {
   219  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   220  		if ms.LoadMessageInfo() == nil {
   221  			ms.StoreMessageInfo(mi)
   222  		}
   223  		return ms
   224  	}
   225  	return mi.MessageOf(x)
   226  }
   227  
   228  // Deprecated: Use SearchReadGroupSetsResponse.ProtoReflect.Descriptor instead.
   229  func (*SearchReadGroupSetsResponse) Descriptor() ([]byte, []int) {
   230  	return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{1}
   231  }
   232  
   233  func (x *SearchReadGroupSetsResponse) GetReadGroupSets() []*ReadGroupSet {
   234  	if x != nil {
   235  		return x.ReadGroupSets
   236  	}
   237  	return nil
   238  }
   239  
   240  func (x *SearchReadGroupSetsResponse) GetNextPageToken() string {
   241  	if x != nil {
   242  		return x.NextPageToken
   243  	}
   244  	return ""
   245  }
   246  
   247  // The read group set import request.
   248  type ImportReadGroupSetsRequest struct {
   249  	state         protoimpl.MessageState
   250  	sizeCache     protoimpl.SizeCache
   251  	unknownFields protoimpl.UnknownFields
   252  
   253  	// Required. The ID of the dataset these read group sets will belong to. The
   254  	// caller must have WRITE permissions to this dataset.
   255  	DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
   256  	// The reference set to which the imported read group sets are aligned to, if
   257  	// any. The reference names of this reference set must be a superset of those
   258  	// found in the imported file headers. If no reference set id is provided, a
   259  	// best effort is made to associate with a matching reference set.
   260  	ReferenceSetId string `protobuf:"bytes,4,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
   261  	// A list of URIs pointing at [BAM
   262  	// files](https://samtools.github.io/hts-specs/SAMv1.pdf)
   263  	// in Google Cloud Storage.
   264  	// Those URIs can include wildcards (*), but do not add or remove
   265  	// matching files before import has completed.
   266  	//
   267  	// Note that Google Cloud Storage object listing is only eventually
   268  	// consistent: files added may be not be immediately visible to
   269  	// everyone. Thus, if using a wildcard it is preferable not to start
   270  	// the import immediately after the files are created.
   271  	SourceUris []string `protobuf:"bytes,2,rep,name=source_uris,json=sourceUris,proto3" json:"source_uris,omitempty"`
   272  	// The partition strategy describes how read groups are partitioned into read
   273  	// group sets.
   274  	PartitionStrategy ImportReadGroupSetsRequest_PartitionStrategy `protobuf:"varint,5,opt,name=partition_strategy,json=partitionStrategy,proto3,enum=google.genomics.v1.ImportReadGroupSetsRequest_PartitionStrategy" json:"partition_strategy,omitempty"`
   275  }
   276  
   277  func (x *ImportReadGroupSetsRequest) Reset() {
   278  	*x = ImportReadGroupSetsRequest{}
   279  	if protoimpl.UnsafeEnabled {
   280  		mi := &file_google_genomics_v1_reads_proto_msgTypes[2]
   281  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   282  		ms.StoreMessageInfo(mi)
   283  	}
   284  }
   285  
   286  func (x *ImportReadGroupSetsRequest) String() string {
   287  	return protoimpl.X.MessageStringOf(x)
   288  }
   289  
   290  func (*ImportReadGroupSetsRequest) ProtoMessage() {}
   291  
   292  func (x *ImportReadGroupSetsRequest) ProtoReflect() protoreflect.Message {
   293  	mi := &file_google_genomics_v1_reads_proto_msgTypes[2]
   294  	if protoimpl.UnsafeEnabled && x != nil {
   295  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   296  		if ms.LoadMessageInfo() == nil {
   297  			ms.StoreMessageInfo(mi)
   298  		}
   299  		return ms
   300  	}
   301  	return mi.MessageOf(x)
   302  }
   303  
   304  // Deprecated: Use ImportReadGroupSetsRequest.ProtoReflect.Descriptor instead.
   305  func (*ImportReadGroupSetsRequest) Descriptor() ([]byte, []int) {
   306  	return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{2}
   307  }
   308  
   309  func (x *ImportReadGroupSetsRequest) GetDatasetId() string {
   310  	if x != nil {
   311  		return x.DatasetId
   312  	}
   313  	return ""
   314  }
   315  
   316  func (x *ImportReadGroupSetsRequest) GetReferenceSetId() string {
   317  	if x != nil {
   318  		return x.ReferenceSetId
   319  	}
   320  	return ""
   321  }
   322  
   323  func (x *ImportReadGroupSetsRequest) GetSourceUris() []string {
   324  	if x != nil {
   325  		return x.SourceUris
   326  	}
   327  	return nil
   328  }
   329  
   330  func (x *ImportReadGroupSetsRequest) GetPartitionStrategy() ImportReadGroupSetsRequest_PartitionStrategy {
   331  	if x != nil {
   332  		return x.PartitionStrategy
   333  	}
   334  	return ImportReadGroupSetsRequest_PARTITION_STRATEGY_UNSPECIFIED
   335  }
   336  
   337  // The read group set import response.
   338  type ImportReadGroupSetsResponse struct {
   339  	state         protoimpl.MessageState
   340  	sizeCache     protoimpl.SizeCache
   341  	unknownFields protoimpl.UnknownFields
   342  
   343  	// IDs of the read group sets that were created.
   344  	ReadGroupSetIds []string `protobuf:"bytes,1,rep,name=read_group_set_ids,json=readGroupSetIds,proto3" json:"read_group_set_ids,omitempty"`
   345  }
   346  
   347  func (x *ImportReadGroupSetsResponse) Reset() {
   348  	*x = ImportReadGroupSetsResponse{}
   349  	if protoimpl.UnsafeEnabled {
   350  		mi := &file_google_genomics_v1_reads_proto_msgTypes[3]
   351  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   352  		ms.StoreMessageInfo(mi)
   353  	}
   354  }
   355  
   356  func (x *ImportReadGroupSetsResponse) String() string {
   357  	return protoimpl.X.MessageStringOf(x)
   358  }
   359  
   360  func (*ImportReadGroupSetsResponse) ProtoMessage() {}
   361  
   362  func (x *ImportReadGroupSetsResponse) ProtoReflect() protoreflect.Message {
   363  	mi := &file_google_genomics_v1_reads_proto_msgTypes[3]
   364  	if protoimpl.UnsafeEnabled && x != nil {
   365  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   366  		if ms.LoadMessageInfo() == nil {
   367  			ms.StoreMessageInfo(mi)
   368  		}
   369  		return ms
   370  	}
   371  	return mi.MessageOf(x)
   372  }
   373  
   374  // Deprecated: Use ImportReadGroupSetsResponse.ProtoReflect.Descriptor instead.
   375  func (*ImportReadGroupSetsResponse) Descriptor() ([]byte, []int) {
   376  	return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{3}
   377  }
   378  
   379  func (x *ImportReadGroupSetsResponse) GetReadGroupSetIds() []string {
   380  	if x != nil {
   381  		return x.ReadGroupSetIds
   382  	}
   383  	return nil
   384  }
   385  
   386  // The read group set export request.
   387  type ExportReadGroupSetRequest struct {
   388  	state         protoimpl.MessageState
   389  	sizeCache     protoimpl.SizeCache
   390  	unknownFields protoimpl.UnknownFields
   391  
   392  	// Required. The Google Cloud project ID that owns this
   393  	// export. The caller must have WRITE access to this project.
   394  	ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
   395  	// Required. A Google Cloud Storage URI for the exported BAM file.
   396  	// The currently authenticated user must have write access to the new file.
   397  	// An error will be returned if the URI already contains data.
   398  	ExportUri string `protobuf:"bytes,2,opt,name=export_uri,json=exportUri,proto3" json:"export_uri,omitempty"`
   399  	// Required. The ID of the read group set to export. The caller must have
   400  	// READ access to this read group set.
   401  	ReadGroupSetId string `protobuf:"bytes,3,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
   402  	// The reference names to export. If this is not specified, all reference
   403  	// sequences, including unmapped reads, are exported.
   404  	// Use `*` to export only unmapped reads.
   405  	ReferenceNames []string `protobuf:"bytes,4,rep,name=reference_names,json=referenceNames,proto3" json:"reference_names,omitempty"`
   406  }
   407  
   408  func (x *ExportReadGroupSetRequest) Reset() {
   409  	*x = ExportReadGroupSetRequest{}
   410  	if protoimpl.UnsafeEnabled {
   411  		mi := &file_google_genomics_v1_reads_proto_msgTypes[4]
   412  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   413  		ms.StoreMessageInfo(mi)
   414  	}
   415  }
   416  
   417  func (x *ExportReadGroupSetRequest) String() string {
   418  	return protoimpl.X.MessageStringOf(x)
   419  }
   420  
   421  func (*ExportReadGroupSetRequest) ProtoMessage() {}
   422  
   423  func (x *ExportReadGroupSetRequest) ProtoReflect() protoreflect.Message {
   424  	mi := &file_google_genomics_v1_reads_proto_msgTypes[4]
   425  	if protoimpl.UnsafeEnabled && x != nil {
   426  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   427  		if ms.LoadMessageInfo() == nil {
   428  			ms.StoreMessageInfo(mi)
   429  		}
   430  		return ms
   431  	}
   432  	return mi.MessageOf(x)
   433  }
   434  
   435  // Deprecated: Use ExportReadGroupSetRequest.ProtoReflect.Descriptor instead.
   436  func (*ExportReadGroupSetRequest) Descriptor() ([]byte, []int) {
   437  	return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{4}
   438  }
   439  
   440  func (x *ExportReadGroupSetRequest) GetProjectId() string {
   441  	if x != nil {
   442  		return x.ProjectId
   443  	}
   444  	return ""
   445  }
   446  
   447  func (x *ExportReadGroupSetRequest) GetExportUri() string {
   448  	if x != nil {
   449  		return x.ExportUri
   450  	}
   451  	return ""
   452  }
   453  
   454  func (x *ExportReadGroupSetRequest) GetReadGroupSetId() string {
   455  	if x != nil {
   456  		return x.ReadGroupSetId
   457  	}
   458  	return ""
   459  }
   460  
   461  func (x *ExportReadGroupSetRequest) GetReferenceNames() []string {
   462  	if x != nil {
   463  		return x.ReferenceNames
   464  	}
   465  	return nil
   466  }
   467  
   468  type UpdateReadGroupSetRequest struct {
   469  	state         protoimpl.MessageState
   470  	sizeCache     protoimpl.SizeCache
   471  	unknownFields protoimpl.UnknownFields
   472  
   473  	// The ID of the read group set to be updated. The caller must have WRITE
   474  	// permissions to the dataset associated with this read group set.
   475  	ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
   476  	// The new read group set data. See `updateMask` for details on mutability of
   477  	// fields.
   478  	ReadGroupSet *ReadGroupSet `protobuf:"bytes,2,opt,name=read_group_set,json=readGroupSet,proto3" json:"read_group_set,omitempty"`
   479  	// An optional mask specifying which fields to update. Supported fields:
   480  	//
   481  	// * [name][google.genomics.v1.ReadGroupSet.name].
   482  	// * [referenceSetId][google.genomics.v1.ReadGroupSet.reference_set_id].
   483  	//
   484  	// Leaving `updateMask` unset is equivalent to specifying all mutable
   485  	// fields.
   486  	UpdateMask *fieldmaskpb.FieldMask `protobuf:"bytes,3,opt,name=update_mask,json=updateMask,proto3" json:"update_mask,omitempty"`
   487  }
   488  
   489  func (x *UpdateReadGroupSetRequest) Reset() {
   490  	*x = UpdateReadGroupSetRequest{}
   491  	if protoimpl.UnsafeEnabled {
   492  		mi := &file_google_genomics_v1_reads_proto_msgTypes[5]
   493  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   494  		ms.StoreMessageInfo(mi)
   495  	}
   496  }
   497  
   498  func (x *UpdateReadGroupSetRequest) String() string {
   499  	return protoimpl.X.MessageStringOf(x)
   500  }
   501  
   502  func (*UpdateReadGroupSetRequest) ProtoMessage() {}
   503  
   504  func (x *UpdateReadGroupSetRequest) ProtoReflect() protoreflect.Message {
   505  	mi := &file_google_genomics_v1_reads_proto_msgTypes[5]
   506  	if protoimpl.UnsafeEnabled && x != nil {
   507  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   508  		if ms.LoadMessageInfo() == nil {
   509  			ms.StoreMessageInfo(mi)
   510  		}
   511  		return ms
   512  	}
   513  	return mi.MessageOf(x)
   514  }
   515  
   516  // Deprecated: Use UpdateReadGroupSetRequest.ProtoReflect.Descriptor instead.
   517  func (*UpdateReadGroupSetRequest) Descriptor() ([]byte, []int) {
   518  	return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{5}
   519  }
   520  
   521  func (x *UpdateReadGroupSetRequest) GetReadGroupSetId() string {
   522  	if x != nil {
   523  		return x.ReadGroupSetId
   524  	}
   525  	return ""
   526  }
   527  
   528  func (x *UpdateReadGroupSetRequest) GetReadGroupSet() *ReadGroupSet {
   529  	if x != nil {
   530  		return x.ReadGroupSet
   531  	}
   532  	return nil
   533  }
   534  
   535  func (x *UpdateReadGroupSetRequest) GetUpdateMask() *fieldmaskpb.FieldMask {
   536  	if x != nil {
   537  		return x.UpdateMask
   538  	}
   539  	return nil
   540  }
   541  
   542  type DeleteReadGroupSetRequest struct {
   543  	state         protoimpl.MessageState
   544  	sizeCache     protoimpl.SizeCache
   545  	unknownFields protoimpl.UnknownFields
   546  
   547  	// The ID of the read group set to be deleted. The caller must have WRITE
   548  	// permissions to the dataset associated with this read group set.
   549  	ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
   550  }
   551  
   552  func (x *DeleteReadGroupSetRequest) Reset() {
   553  	*x = DeleteReadGroupSetRequest{}
   554  	if protoimpl.UnsafeEnabled {
   555  		mi := &file_google_genomics_v1_reads_proto_msgTypes[6]
   556  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   557  		ms.StoreMessageInfo(mi)
   558  	}
   559  }
   560  
   561  func (x *DeleteReadGroupSetRequest) String() string {
   562  	return protoimpl.X.MessageStringOf(x)
   563  }
   564  
   565  func (*DeleteReadGroupSetRequest) ProtoMessage() {}
   566  
   567  func (x *DeleteReadGroupSetRequest) ProtoReflect() protoreflect.Message {
   568  	mi := &file_google_genomics_v1_reads_proto_msgTypes[6]
   569  	if protoimpl.UnsafeEnabled && x != nil {
   570  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   571  		if ms.LoadMessageInfo() == nil {
   572  			ms.StoreMessageInfo(mi)
   573  		}
   574  		return ms
   575  	}
   576  	return mi.MessageOf(x)
   577  }
   578  
   579  // Deprecated: Use DeleteReadGroupSetRequest.ProtoReflect.Descriptor instead.
   580  func (*DeleteReadGroupSetRequest) Descriptor() ([]byte, []int) {
   581  	return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{6}
   582  }
   583  
   584  func (x *DeleteReadGroupSetRequest) GetReadGroupSetId() string {
   585  	if x != nil {
   586  		return x.ReadGroupSetId
   587  	}
   588  	return ""
   589  }
   590  
   591  type GetReadGroupSetRequest struct {
   592  	state         protoimpl.MessageState
   593  	sizeCache     protoimpl.SizeCache
   594  	unknownFields protoimpl.UnknownFields
   595  
   596  	// The ID of the read group set.
   597  	ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
   598  }
   599  
   600  func (x *GetReadGroupSetRequest) Reset() {
   601  	*x = GetReadGroupSetRequest{}
   602  	if protoimpl.UnsafeEnabled {
   603  		mi := &file_google_genomics_v1_reads_proto_msgTypes[7]
   604  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   605  		ms.StoreMessageInfo(mi)
   606  	}
   607  }
   608  
   609  func (x *GetReadGroupSetRequest) String() string {
   610  	return protoimpl.X.MessageStringOf(x)
   611  }
   612  
   613  func (*GetReadGroupSetRequest) ProtoMessage() {}
   614  
   615  func (x *GetReadGroupSetRequest) ProtoReflect() protoreflect.Message {
   616  	mi := &file_google_genomics_v1_reads_proto_msgTypes[7]
   617  	if protoimpl.UnsafeEnabled && x != nil {
   618  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   619  		if ms.LoadMessageInfo() == nil {
   620  			ms.StoreMessageInfo(mi)
   621  		}
   622  		return ms
   623  	}
   624  	return mi.MessageOf(x)
   625  }
   626  
   627  // Deprecated: Use GetReadGroupSetRequest.ProtoReflect.Descriptor instead.
   628  func (*GetReadGroupSetRequest) Descriptor() ([]byte, []int) {
   629  	return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{7}
   630  }
   631  
   632  func (x *GetReadGroupSetRequest) GetReadGroupSetId() string {
   633  	if x != nil {
   634  		return x.ReadGroupSetId
   635  	}
   636  	return ""
   637  }
   638  
   639  type ListCoverageBucketsRequest struct {
   640  	state         protoimpl.MessageState
   641  	sizeCache     protoimpl.SizeCache
   642  	unknownFields protoimpl.UnknownFields
   643  
   644  	// Required. The ID of the read group set over which coverage is requested.
   645  	ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
   646  	// The name of the reference to query, within the reference set associated
   647  	// with this query. Optional.
   648  	ReferenceName string `protobuf:"bytes,3,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
   649  	// The start position of the range on the reference, 0-based inclusive. If
   650  	// specified, `referenceName` must also be specified. Defaults to 0.
   651  	Start int64 `protobuf:"varint,4,opt,name=start,proto3" json:"start,omitempty"`
   652  	// The end position of the range on the reference, 0-based exclusive. If
   653  	// specified, `referenceName` must also be specified. If unset or 0, defaults
   654  	// to the length of the reference.
   655  	End int64 `protobuf:"varint,5,opt,name=end,proto3" json:"end,omitempty"`
   656  	// The desired width of each reported coverage bucket in base pairs. This
   657  	// will be rounded down to the nearest precomputed bucket width; the value
   658  	// of which is returned as `bucketWidth` in the response. Defaults
   659  	// to infinity (each bucket spans an entire reference sequence) or the length
   660  	// of the target range, if specified. The smallest precomputed
   661  	// `bucketWidth` is currently 2048 base pairs; this is subject to
   662  	// change.
   663  	TargetBucketWidth int64 `protobuf:"varint,6,opt,name=target_bucket_width,json=targetBucketWidth,proto3" json:"target_bucket_width,omitempty"`
   664  	// The continuation token, which is used to page through large result sets.
   665  	// To get the next page of results, set this parameter to the value of
   666  	// `nextPageToken` from the previous response.
   667  	PageToken string `protobuf:"bytes,7,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
   668  	// The maximum number of results to return in a single page. If unspecified,
   669  	// defaults to 1024. The maximum value is 2048.
   670  	PageSize int32 `protobuf:"varint,8,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
   671  }
   672  
   673  func (x *ListCoverageBucketsRequest) Reset() {
   674  	*x = ListCoverageBucketsRequest{}
   675  	if protoimpl.UnsafeEnabled {
   676  		mi := &file_google_genomics_v1_reads_proto_msgTypes[8]
   677  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   678  		ms.StoreMessageInfo(mi)
   679  	}
   680  }
   681  
   682  func (x *ListCoverageBucketsRequest) String() string {
   683  	return protoimpl.X.MessageStringOf(x)
   684  }
   685  
   686  func (*ListCoverageBucketsRequest) ProtoMessage() {}
   687  
   688  func (x *ListCoverageBucketsRequest) ProtoReflect() protoreflect.Message {
   689  	mi := &file_google_genomics_v1_reads_proto_msgTypes[8]
   690  	if protoimpl.UnsafeEnabled && x != nil {
   691  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   692  		if ms.LoadMessageInfo() == nil {
   693  			ms.StoreMessageInfo(mi)
   694  		}
   695  		return ms
   696  	}
   697  	return mi.MessageOf(x)
   698  }
   699  
   700  // Deprecated: Use ListCoverageBucketsRequest.ProtoReflect.Descriptor instead.
   701  func (*ListCoverageBucketsRequest) Descriptor() ([]byte, []int) {
   702  	return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{8}
   703  }
   704  
   705  func (x *ListCoverageBucketsRequest) GetReadGroupSetId() string {
   706  	if x != nil {
   707  		return x.ReadGroupSetId
   708  	}
   709  	return ""
   710  }
   711  
   712  func (x *ListCoverageBucketsRequest) GetReferenceName() string {
   713  	if x != nil {
   714  		return x.ReferenceName
   715  	}
   716  	return ""
   717  }
   718  
   719  func (x *ListCoverageBucketsRequest) GetStart() int64 {
   720  	if x != nil {
   721  		return x.Start
   722  	}
   723  	return 0
   724  }
   725  
   726  func (x *ListCoverageBucketsRequest) GetEnd() int64 {
   727  	if x != nil {
   728  		return x.End
   729  	}
   730  	return 0
   731  }
   732  
   733  func (x *ListCoverageBucketsRequest) GetTargetBucketWidth() int64 {
   734  	if x != nil {
   735  		return x.TargetBucketWidth
   736  	}
   737  	return 0
   738  }
   739  
   740  func (x *ListCoverageBucketsRequest) GetPageToken() string {
   741  	if x != nil {
   742  		return x.PageToken
   743  	}
   744  	return ""
   745  }
   746  
   747  func (x *ListCoverageBucketsRequest) GetPageSize() int32 {
   748  	if x != nil {
   749  		return x.PageSize
   750  	}
   751  	return 0
   752  }
   753  
   754  // A bucket over which read coverage has been precomputed. A bucket corresponds
   755  // to a specific range of the reference sequence.
   756  type CoverageBucket struct {
   757  	state         protoimpl.MessageState
   758  	sizeCache     protoimpl.SizeCache
   759  	unknownFields protoimpl.UnknownFields
   760  
   761  	// The genomic coordinate range spanned by this bucket.
   762  	Range *Range `protobuf:"bytes,1,opt,name=range,proto3" json:"range,omitempty"`
   763  	// The average number of reads which are aligned to each individual
   764  	// reference base in this bucket.
   765  	MeanCoverage float32 `protobuf:"fixed32,2,opt,name=mean_coverage,json=meanCoverage,proto3" json:"mean_coverage,omitempty"`
   766  }
   767  
   768  func (x *CoverageBucket) Reset() {
   769  	*x = CoverageBucket{}
   770  	if protoimpl.UnsafeEnabled {
   771  		mi := &file_google_genomics_v1_reads_proto_msgTypes[9]
   772  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   773  		ms.StoreMessageInfo(mi)
   774  	}
   775  }
   776  
   777  func (x *CoverageBucket) String() string {
   778  	return protoimpl.X.MessageStringOf(x)
   779  }
   780  
   781  func (*CoverageBucket) ProtoMessage() {}
   782  
   783  func (x *CoverageBucket) ProtoReflect() protoreflect.Message {
   784  	mi := &file_google_genomics_v1_reads_proto_msgTypes[9]
   785  	if protoimpl.UnsafeEnabled && x != nil {
   786  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   787  		if ms.LoadMessageInfo() == nil {
   788  			ms.StoreMessageInfo(mi)
   789  		}
   790  		return ms
   791  	}
   792  	return mi.MessageOf(x)
   793  }
   794  
   795  // Deprecated: Use CoverageBucket.ProtoReflect.Descriptor instead.
   796  func (*CoverageBucket) Descriptor() ([]byte, []int) {
   797  	return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{9}
   798  }
   799  
   800  func (x *CoverageBucket) GetRange() *Range {
   801  	if x != nil {
   802  		return x.Range
   803  	}
   804  	return nil
   805  }
   806  
   807  func (x *CoverageBucket) GetMeanCoverage() float32 {
   808  	if x != nil {
   809  		return x.MeanCoverage
   810  	}
   811  	return 0
   812  }
   813  
   814  type ListCoverageBucketsResponse struct {
   815  	state         protoimpl.MessageState
   816  	sizeCache     protoimpl.SizeCache
   817  	unknownFields protoimpl.UnknownFields
   818  
   819  	// The length of each coverage bucket in base pairs. Note that buckets at the
   820  	// end of a reference sequence may be shorter. This value is omitted if the
   821  	// bucket width is infinity (the default behaviour, with no range or
   822  	// `targetBucketWidth`).
   823  	BucketWidth int64 `protobuf:"varint,1,opt,name=bucket_width,json=bucketWidth,proto3" json:"bucket_width,omitempty"`
   824  	// The coverage buckets. The list of buckets is sparse; a bucket with 0
   825  	// overlapping reads is not returned. A bucket never crosses more than one
   826  	// reference sequence. Each bucket has width `bucketWidth`, unless
   827  	// its end is the end of the reference sequence.
   828  	CoverageBuckets []*CoverageBucket `protobuf:"bytes,2,rep,name=coverage_buckets,json=coverageBuckets,proto3" json:"coverage_buckets,omitempty"`
   829  	// The continuation token, which is used to page through large result sets.
   830  	// Provide this value in a subsequent request to return the next page of
   831  	// results. This field will be empty if there aren't any additional results.
   832  	NextPageToken string `protobuf:"bytes,3,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
   833  }
   834  
   835  func (x *ListCoverageBucketsResponse) Reset() {
   836  	*x = ListCoverageBucketsResponse{}
   837  	if protoimpl.UnsafeEnabled {
   838  		mi := &file_google_genomics_v1_reads_proto_msgTypes[10]
   839  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   840  		ms.StoreMessageInfo(mi)
   841  	}
   842  }
   843  
   844  func (x *ListCoverageBucketsResponse) String() string {
   845  	return protoimpl.X.MessageStringOf(x)
   846  }
   847  
   848  func (*ListCoverageBucketsResponse) ProtoMessage() {}
   849  
   850  func (x *ListCoverageBucketsResponse) ProtoReflect() protoreflect.Message {
   851  	mi := &file_google_genomics_v1_reads_proto_msgTypes[10]
   852  	if protoimpl.UnsafeEnabled && x != nil {
   853  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   854  		if ms.LoadMessageInfo() == nil {
   855  			ms.StoreMessageInfo(mi)
   856  		}
   857  		return ms
   858  	}
   859  	return mi.MessageOf(x)
   860  }
   861  
   862  // Deprecated: Use ListCoverageBucketsResponse.ProtoReflect.Descriptor instead.
   863  func (*ListCoverageBucketsResponse) Descriptor() ([]byte, []int) {
   864  	return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{10}
   865  }
   866  
   867  func (x *ListCoverageBucketsResponse) GetBucketWidth() int64 {
   868  	if x != nil {
   869  		return x.BucketWidth
   870  	}
   871  	return 0
   872  }
   873  
   874  func (x *ListCoverageBucketsResponse) GetCoverageBuckets() []*CoverageBucket {
   875  	if x != nil {
   876  		return x.CoverageBuckets
   877  	}
   878  	return nil
   879  }
   880  
   881  func (x *ListCoverageBucketsResponse) GetNextPageToken() string {
   882  	if x != nil {
   883  		return x.NextPageToken
   884  	}
   885  	return ""
   886  }
   887  
   888  // The read search request.
   889  type SearchReadsRequest struct {
   890  	state         protoimpl.MessageState
   891  	sizeCache     protoimpl.SizeCache
   892  	unknownFields protoimpl.UnknownFields
   893  
   894  	// The IDs of the read groups sets within which to search for reads. All
   895  	// specified read group sets must be aligned against a common set of reference
   896  	// sequences; this defines the genomic coordinates for the query. Must specify
   897  	// one of `readGroupSetIds` or `readGroupIds`.
   898  	ReadGroupSetIds []string `protobuf:"bytes,1,rep,name=read_group_set_ids,json=readGroupSetIds,proto3" json:"read_group_set_ids,omitempty"`
   899  	// The IDs of the read groups within which to search for reads. All specified
   900  	// read groups must belong to the same read group sets. Must specify one of
   901  	// `readGroupSetIds` or `readGroupIds`.
   902  	ReadGroupIds []string `protobuf:"bytes,5,rep,name=read_group_ids,json=readGroupIds,proto3" json:"read_group_ids,omitempty"`
   903  	// The reference sequence name, for example `chr1`, `1`, or `chrX`. If set to
   904  	// `*`, only unmapped reads are returned. If unspecified, all reads (mapped
   905  	// and unmapped) are returned.
   906  	ReferenceName string `protobuf:"bytes,7,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
   907  	// The start position of the range on the reference, 0-based inclusive. If
   908  	// specified, `referenceName` must also be specified.
   909  	Start int64 `protobuf:"varint,8,opt,name=start,proto3" json:"start,omitempty"`
   910  	// The end position of the range on the reference, 0-based exclusive. If
   911  	// specified, `referenceName` must also be specified.
   912  	End int64 `protobuf:"varint,9,opt,name=end,proto3" json:"end,omitempty"`
   913  	// The continuation token, which is used to page through large result sets.
   914  	// To get the next page of results, set this parameter to the value of
   915  	// `nextPageToken` from the previous response.
   916  	PageToken string `protobuf:"bytes,3,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
   917  	// The maximum number of results to return in a single page. If unspecified,
   918  	// defaults to 256. The maximum value is 2048.
   919  	PageSize int32 `protobuf:"varint,4,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
   920  }
   921  
   922  func (x *SearchReadsRequest) Reset() {
   923  	*x = SearchReadsRequest{}
   924  	if protoimpl.UnsafeEnabled {
   925  		mi := &file_google_genomics_v1_reads_proto_msgTypes[11]
   926  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   927  		ms.StoreMessageInfo(mi)
   928  	}
   929  }
   930  
   931  func (x *SearchReadsRequest) String() string {
   932  	return protoimpl.X.MessageStringOf(x)
   933  }
   934  
   935  func (*SearchReadsRequest) ProtoMessage() {}
   936  
   937  func (x *SearchReadsRequest) ProtoReflect() protoreflect.Message {
   938  	mi := &file_google_genomics_v1_reads_proto_msgTypes[11]
   939  	if protoimpl.UnsafeEnabled && x != nil {
   940  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
   941  		if ms.LoadMessageInfo() == nil {
   942  			ms.StoreMessageInfo(mi)
   943  		}
   944  		return ms
   945  	}
   946  	return mi.MessageOf(x)
   947  }
   948  
   949  // Deprecated: Use SearchReadsRequest.ProtoReflect.Descriptor instead.
   950  func (*SearchReadsRequest) Descriptor() ([]byte, []int) {
   951  	return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{11}
   952  }
   953  
   954  func (x *SearchReadsRequest) GetReadGroupSetIds() []string {
   955  	if x != nil {
   956  		return x.ReadGroupSetIds
   957  	}
   958  	return nil
   959  }
   960  
   961  func (x *SearchReadsRequest) GetReadGroupIds() []string {
   962  	if x != nil {
   963  		return x.ReadGroupIds
   964  	}
   965  	return nil
   966  }
   967  
   968  func (x *SearchReadsRequest) GetReferenceName() string {
   969  	if x != nil {
   970  		return x.ReferenceName
   971  	}
   972  	return ""
   973  }
   974  
   975  func (x *SearchReadsRequest) GetStart() int64 {
   976  	if x != nil {
   977  		return x.Start
   978  	}
   979  	return 0
   980  }
   981  
   982  func (x *SearchReadsRequest) GetEnd() int64 {
   983  	if x != nil {
   984  		return x.End
   985  	}
   986  	return 0
   987  }
   988  
   989  func (x *SearchReadsRequest) GetPageToken() string {
   990  	if x != nil {
   991  		return x.PageToken
   992  	}
   993  	return ""
   994  }
   995  
   996  func (x *SearchReadsRequest) GetPageSize() int32 {
   997  	if x != nil {
   998  		return x.PageSize
   999  	}
  1000  	return 0
  1001  }
  1002  
  1003  // The read search response.
  1004  type SearchReadsResponse struct {
  1005  	state         protoimpl.MessageState
  1006  	sizeCache     protoimpl.SizeCache
  1007  	unknownFields protoimpl.UnknownFields
  1008  
  1009  	// The list of matching alignments sorted by mapped genomic coordinate,
  1010  	// if any, ascending in position within the same reference. Unmapped reads,
  1011  	// which have no position, are returned contiguously and are sorted in
  1012  	// ascending lexicographic order by fragment name.
  1013  	Alignments []*Read `protobuf:"bytes,1,rep,name=alignments,proto3" json:"alignments,omitempty"`
  1014  	// The continuation token, which is used to page through large result sets.
  1015  	// Provide this value in a subsequent request to return the next page of
  1016  	// results. This field will be empty if there aren't any additional results.
  1017  	NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
  1018  }
  1019  
  1020  func (x *SearchReadsResponse) Reset() {
  1021  	*x = SearchReadsResponse{}
  1022  	if protoimpl.UnsafeEnabled {
  1023  		mi := &file_google_genomics_v1_reads_proto_msgTypes[12]
  1024  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
  1025  		ms.StoreMessageInfo(mi)
  1026  	}
  1027  }
  1028  
  1029  func (x *SearchReadsResponse) String() string {
  1030  	return protoimpl.X.MessageStringOf(x)
  1031  }
  1032  
  1033  func (*SearchReadsResponse) ProtoMessage() {}
  1034  
  1035  func (x *SearchReadsResponse) ProtoReflect() protoreflect.Message {
  1036  	mi := &file_google_genomics_v1_reads_proto_msgTypes[12]
  1037  	if protoimpl.UnsafeEnabled && x != nil {
  1038  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
  1039  		if ms.LoadMessageInfo() == nil {
  1040  			ms.StoreMessageInfo(mi)
  1041  		}
  1042  		return ms
  1043  	}
  1044  	return mi.MessageOf(x)
  1045  }
  1046  
  1047  // Deprecated: Use SearchReadsResponse.ProtoReflect.Descriptor instead.
  1048  func (*SearchReadsResponse) Descriptor() ([]byte, []int) {
  1049  	return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{12}
  1050  }
  1051  
  1052  func (x *SearchReadsResponse) GetAlignments() []*Read {
  1053  	if x != nil {
  1054  		return x.Alignments
  1055  	}
  1056  	return nil
  1057  }
  1058  
  1059  func (x *SearchReadsResponse) GetNextPageToken() string {
  1060  	if x != nil {
  1061  		return x.NextPageToken
  1062  	}
  1063  	return ""
  1064  }
  1065  
  1066  // The stream reads request.
  1067  type StreamReadsRequest struct {
  1068  	state         protoimpl.MessageState
  1069  	sizeCache     protoimpl.SizeCache
  1070  	unknownFields protoimpl.UnknownFields
  1071  
  1072  	// The Google Cloud project ID which will be billed
  1073  	// for this access. The caller must have WRITE access to this project.
  1074  	// Required.
  1075  	ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
  1076  	// The ID of the read group set from which to stream reads.
  1077  	ReadGroupSetId string `protobuf:"bytes,2,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
  1078  	// The reference sequence name, for example `chr1`,
  1079  	// `1`, or `chrX`. If set to *, only unmapped reads are
  1080  	// returned.
  1081  	ReferenceName string `protobuf:"bytes,3,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
  1082  	// The start position of the range on the reference, 0-based inclusive. If
  1083  	// specified, `referenceName` must also be specified.
  1084  	Start int64 `protobuf:"varint,4,opt,name=start,proto3" json:"start,omitempty"`
  1085  	// The end position of the range on the reference, 0-based exclusive. If
  1086  	// specified, `referenceName` must also be specified.
  1087  	End int64 `protobuf:"varint,5,opt,name=end,proto3" json:"end,omitempty"`
  1088  	// Restricts results to a shard containing approximately `1/totalShards`
  1089  	// of the normal response payload for this query. Results from a sharded
  1090  	// request are disjoint from those returned by all queries which differ only
  1091  	// in their shard parameter. A shard may yield 0 results; this is especially
  1092  	// likely for large values of `totalShards`.
  1093  	//
  1094  	// Valid values are `[0, totalShards)`.
  1095  	Shard int32 `protobuf:"varint,6,opt,name=shard,proto3" json:"shard,omitempty"`
  1096  	// Specifying `totalShards` causes a disjoint subset of the normal response
  1097  	// payload to be returned for each query with a unique `shard` parameter
  1098  	// specified. A best effort is made to yield equally sized shards. Sharding
  1099  	// can be used to distribute processing amongst workers, where each worker is
  1100  	// assigned a unique `shard` number and all workers specify the same
  1101  	// `totalShards` number. The union of reads returned for all sharded queries
  1102  	// `[0, totalShards)` is equal to those returned by a single unsharded query.
  1103  	//
  1104  	// Queries for different values of `totalShards` with common divisors will
  1105  	// share shard boundaries. For example, streaming `shard` 2 of 5
  1106  	// `totalShards` yields the same results as streaming `shard`s 4 and 5 of 10
  1107  	// `totalShards`. This property can be leveraged for adaptive retries.
  1108  	TotalShards int32 `protobuf:"varint,7,opt,name=total_shards,json=totalShards,proto3" json:"total_shards,omitempty"`
  1109  }
  1110  
  1111  func (x *StreamReadsRequest) Reset() {
  1112  	*x = StreamReadsRequest{}
  1113  	if protoimpl.UnsafeEnabled {
  1114  		mi := &file_google_genomics_v1_reads_proto_msgTypes[13]
  1115  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
  1116  		ms.StoreMessageInfo(mi)
  1117  	}
  1118  }
  1119  
  1120  func (x *StreamReadsRequest) String() string {
  1121  	return protoimpl.X.MessageStringOf(x)
  1122  }
  1123  
  1124  func (*StreamReadsRequest) ProtoMessage() {}
  1125  
  1126  func (x *StreamReadsRequest) ProtoReflect() protoreflect.Message {
  1127  	mi := &file_google_genomics_v1_reads_proto_msgTypes[13]
  1128  	if protoimpl.UnsafeEnabled && x != nil {
  1129  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
  1130  		if ms.LoadMessageInfo() == nil {
  1131  			ms.StoreMessageInfo(mi)
  1132  		}
  1133  		return ms
  1134  	}
  1135  	return mi.MessageOf(x)
  1136  }
  1137  
  1138  // Deprecated: Use StreamReadsRequest.ProtoReflect.Descriptor instead.
  1139  func (*StreamReadsRequest) Descriptor() ([]byte, []int) {
  1140  	return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{13}
  1141  }
  1142  
  1143  func (x *StreamReadsRequest) GetProjectId() string {
  1144  	if x != nil {
  1145  		return x.ProjectId
  1146  	}
  1147  	return ""
  1148  }
  1149  
  1150  func (x *StreamReadsRequest) GetReadGroupSetId() string {
  1151  	if x != nil {
  1152  		return x.ReadGroupSetId
  1153  	}
  1154  	return ""
  1155  }
  1156  
  1157  func (x *StreamReadsRequest) GetReferenceName() string {
  1158  	if x != nil {
  1159  		return x.ReferenceName
  1160  	}
  1161  	return ""
  1162  }
  1163  
  1164  func (x *StreamReadsRequest) GetStart() int64 {
  1165  	if x != nil {
  1166  		return x.Start
  1167  	}
  1168  	return 0
  1169  }
  1170  
  1171  func (x *StreamReadsRequest) GetEnd() int64 {
  1172  	if x != nil {
  1173  		return x.End
  1174  	}
  1175  	return 0
  1176  }
  1177  
  1178  func (x *StreamReadsRequest) GetShard() int32 {
  1179  	if x != nil {
  1180  		return x.Shard
  1181  	}
  1182  	return 0
  1183  }
  1184  
  1185  func (x *StreamReadsRequest) GetTotalShards() int32 {
  1186  	if x != nil {
  1187  		return x.TotalShards
  1188  	}
  1189  	return 0
  1190  }
  1191  
  1192  type StreamReadsResponse struct {
  1193  	state         protoimpl.MessageState
  1194  	sizeCache     protoimpl.SizeCache
  1195  	unknownFields protoimpl.UnknownFields
  1196  
  1197  	Alignments []*Read `protobuf:"bytes,1,rep,name=alignments,proto3" json:"alignments,omitempty"`
  1198  }
  1199  
  1200  func (x *StreamReadsResponse) Reset() {
  1201  	*x = StreamReadsResponse{}
  1202  	if protoimpl.UnsafeEnabled {
  1203  		mi := &file_google_genomics_v1_reads_proto_msgTypes[14]
  1204  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
  1205  		ms.StoreMessageInfo(mi)
  1206  	}
  1207  }
  1208  
  1209  func (x *StreamReadsResponse) String() string {
  1210  	return protoimpl.X.MessageStringOf(x)
  1211  }
  1212  
  1213  func (*StreamReadsResponse) ProtoMessage() {}
  1214  
  1215  func (x *StreamReadsResponse) ProtoReflect() protoreflect.Message {
  1216  	mi := &file_google_genomics_v1_reads_proto_msgTypes[14]
  1217  	if protoimpl.UnsafeEnabled && x != nil {
  1218  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
  1219  		if ms.LoadMessageInfo() == nil {
  1220  			ms.StoreMessageInfo(mi)
  1221  		}
  1222  		return ms
  1223  	}
  1224  	return mi.MessageOf(x)
  1225  }
  1226  
  1227  // Deprecated: Use StreamReadsResponse.ProtoReflect.Descriptor instead.
  1228  func (*StreamReadsResponse) Descriptor() ([]byte, []int) {
  1229  	return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{14}
  1230  }
  1231  
  1232  func (x *StreamReadsResponse) GetAlignments() []*Read {
  1233  	if x != nil {
  1234  		return x.Alignments
  1235  	}
  1236  	return nil
  1237  }
  1238  
  1239  var File_google_genomics_v1_reads_proto protoreflect.FileDescriptor
  1240  
  1241  var file_google_genomics_v1_reads_proto_rawDesc = []byte{
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  1509  }
  1510  
  1511  var (
  1512  	file_google_genomics_v1_reads_proto_rawDescOnce sync.Once
  1513  	file_google_genomics_v1_reads_proto_rawDescData = file_google_genomics_v1_reads_proto_rawDesc
  1514  )
  1515  
  1516  func file_google_genomics_v1_reads_proto_rawDescGZIP() []byte {
  1517  	file_google_genomics_v1_reads_proto_rawDescOnce.Do(func() {
  1518  		file_google_genomics_v1_reads_proto_rawDescData = protoimpl.X.CompressGZIP(file_google_genomics_v1_reads_proto_rawDescData)
  1519  	})
  1520  	return file_google_genomics_v1_reads_proto_rawDescData
  1521  }
  1522  
  1523  var file_google_genomics_v1_reads_proto_enumTypes = make([]protoimpl.EnumInfo, 1)
  1524  var file_google_genomics_v1_reads_proto_msgTypes = make([]protoimpl.MessageInfo, 15)
  1525  var file_google_genomics_v1_reads_proto_goTypes = []interface{}{
  1526  	(ImportReadGroupSetsRequest_PartitionStrategy)(0), // 0: google.genomics.v1.ImportReadGroupSetsRequest.PartitionStrategy
  1527  	(*SearchReadGroupSetsRequest)(nil),                // 1: google.genomics.v1.SearchReadGroupSetsRequest
  1528  	(*SearchReadGroupSetsResponse)(nil),               // 2: google.genomics.v1.SearchReadGroupSetsResponse
  1529  	(*ImportReadGroupSetsRequest)(nil),                // 3: google.genomics.v1.ImportReadGroupSetsRequest
  1530  	(*ImportReadGroupSetsResponse)(nil),               // 4: google.genomics.v1.ImportReadGroupSetsResponse
  1531  	(*ExportReadGroupSetRequest)(nil),                 // 5: google.genomics.v1.ExportReadGroupSetRequest
  1532  	(*UpdateReadGroupSetRequest)(nil),                 // 6: google.genomics.v1.UpdateReadGroupSetRequest
  1533  	(*DeleteReadGroupSetRequest)(nil),                 // 7: google.genomics.v1.DeleteReadGroupSetRequest
  1534  	(*GetReadGroupSetRequest)(nil),                    // 8: google.genomics.v1.GetReadGroupSetRequest
  1535  	(*ListCoverageBucketsRequest)(nil),                // 9: google.genomics.v1.ListCoverageBucketsRequest
  1536  	(*CoverageBucket)(nil),                            // 10: google.genomics.v1.CoverageBucket
  1537  	(*ListCoverageBucketsResponse)(nil),               // 11: google.genomics.v1.ListCoverageBucketsResponse
  1538  	(*SearchReadsRequest)(nil),                        // 12: google.genomics.v1.SearchReadsRequest
  1539  	(*SearchReadsResponse)(nil),                       // 13: google.genomics.v1.SearchReadsResponse
  1540  	(*StreamReadsRequest)(nil),                        // 14: google.genomics.v1.StreamReadsRequest
  1541  	(*StreamReadsResponse)(nil),                       // 15: google.genomics.v1.StreamReadsResponse
  1542  	(*ReadGroupSet)(nil),                              // 16: google.genomics.v1.ReadGroupSet
  1543  	(*fieldmaskpb.FieldMask)(nil),                     // 17: google.protobuf.FieldMask
  1544  	(*Range)(nil),                                     // 18: google.genomics.v1.Range
  1545  	(*Read)(nil),                                      // 19: google.genomics.v1.Read
  1546  	(*longrunningpb.Operation)(nil),                   // 20: google.longrunning.Operation
  1547  	(*emptypb.Empty)(nil),                             // 21: google.protobuf.Empty
  1548  }
  1549  var file_google_genomics_v1_reads_proto_depIdxs = []int32{
  1550  	16, // 0: google.genomics.v1.SearchReadGroupSetsResponse.read_group_sets:type_name -> google.genomics.v1.ReadGroupSet
  1551  	0,  // 1: google.genomics.v1.ImportReadGroupSetsRequest.partition_strategy:type_name -> google.genomics.v1.ImportReadGroupSetsRequest.PartitionStrategy
  1552  	16, // 2: google.genomics.v1.UpdateReadGroupSetRequest.read_group_set:type_name -> google.genomics.v1.ReadGroupSet
  1553  	17, // 3: google.genomics.v1.UpdateReadGroupSetRequest.update_mask:type_name -> google.protobuf.FieldMask
  1554  	18, // 4: google.genomics.v1.CoverageBucket.range:type_name -> google.genomics.v1.Range
  1555  	10, // 5: google.genomics.v1.ListCoverageBucketsResponse.coverage_buckets:type_name -> google.genomics.v1.CoverageBucket
  1556  	19, // 6: google.genomics.v1.SearchReadsResponse.alignments:type_name -> google.genomics.v1.Read
  1557  	19, // 7: google.genomics.v1.StreamReadsResponse.alignments:type_name -> google.genomics.v1.Read
  1558  	14, // 8: google.genomics.v1.StreamingReadService.StreamReads:input_type -> google.genomics.v1.StreamReadsRequest
  1559  	3,  // 9: google.genomics.v1.ReadServiceV1.ImportReadGroupSets:input_type -> google.genomics.v1.ImportReadGroupSetsRequest
  1560  	5,  // 10: google.genomics.v1.ReadServiceV1.ExportReadGroupSet:input_type -> google.genomics.v1.ExportReadGroupSetRequest
  1561  	1,  // 11: google.genomics.v1.ReadServiceV1.SearchReadGroupSets:input_type -> google.genomics.v1.SearchReadGroupSetsRequest
  1562  	6,  // 12: google.genomics.v1.ReadServiceV1.UpdateReadGroupSet:input_type -> google.genomics.v1.UpdateReadGroupSetRequest
  1563  	7,  // 13: google.genomics.v1.ReadServiceV1.DeleteReadGroupSet:input_type -> google.genomics.v1.DeleteReadGroupSetRequest
  1564  	8,  // 14: google.genomics.v1.ReadServiceV1.GetReadGroupSet:input_type -> google.genomics.v1.GetReadGroupSetRequest
  1565  	9,  // 15: google.genomics.v1.ReadServiceV1.ListCoverageBuckets:input_type -> google.genomics.v1.ListCoverageBucketsRequest
  1566  	12, // 16: google.genomics.v1.ReadServiceV1.SearchReads:input_type -> google.genomics.v1.SearchReadsRequest
  1567  	15, // 17: google.genomics.v1.StreamingReadService.StreamReads:output_type -> google.genomics.v1.StreamReadsResponse
  1568  	20, // 18: google.genomics.v1.ReadServiceV1.ImportReadGroupSets:output_type -> google.longrunning.Operation
  1569  	20, // 19: google.genomics.v1.ReadServiceV1.ExportReadGroupSet:output_type -> google.longrunning.Operation
  1570  	2,  // 20: google.genomics.v1.ReadServiceV1.SearchReadGroupSets:output_type -> google.genomics.v1.SearchReadGroupSetsResponse
  1571  	16, // 21: google.genomics.v1.ReadServiceV1.UpdateReadGroupSet:output_type -> google.genomics.v1.ReadGroupSet
  1572  	21, // 22: google.genomics.v1.ReadServiceV1.DeleteReadGroupSet:output_type -> google.protobuf.Empty
  1573  	16, // 23: google.genomics.v1.ReadServiceV1.GetReadGroupSet:output_type -> google.genomics.v1.ReadGroupSet
  1574  	11, // 24: google.genomics.v1.ReadServiceV1.ListCoverageBuckets:output_type -> google.genomics.v1.ListCoverageBucketsResponse
  1575  	13, // 25: google.genomics.v1.ReadServiceV1.SearchReads:output_type -> google.genomics.v1.SearchReadsResponse
  1576  	17, // [17:26] is the sub-list for method output_type
  1577  	8,  // [8:17] is the sub-list for method input_type
  1578  	8,  // [8:8] is the sub-list for extension type_name
  1579  	8,  // [8:8] is the sub-list for extension extendee
  1580  	0,  // [0:8] is the sub-list for field type_name
  1581  }
  1582  
  1583  func init() { file_google_genomics_v1_reads_proto_init() }
  1584  func file_google_genomics_v1_reads_proto_init() {
  1585  	if File_google_genomics_v1_reads_proto != nil {
  1586  		return
  1587  	}
  1588  	file_google_genomics_v1_range_proto_init()
  1589  	file_google_genomics_v1_readalignment_proto_init()
  1590  	file_google_genomics_v1_readgroupset_proto_init()
  1591  	if !protoimpl.UnsafeEnabled {
  1592  		file_google_genomics_v1_reads_proto_msgTypes[0].Exporter = func(v interface{}, i int) interface{} {
  1593  			switch v := v.(*SearchReadGroupSetsRequest); i {
  1594  			case 0:
  1595  				return &v.state
  1596  			case 1:
  1597  				return &v.sizeCache
  1598  			case 2:
  1599  				return &v.unknownFields
  1600  			default:
  1601  				return nil
  1602  			}
  1603  		}
  1604  		file_google_genomics_v1_reads_proto_msgTypes[1].Exporter = func(v interface{}, i int) interface{} {
  1605  			switch v := v.(*SearchReadGroupSetsResponse); i {
  1606  			case 0:
  1607  				return &v.state
  1608  			case 1:
  1609  				return &v.sizeCache
  1610  			case 2:
  1611  				return &v.unknownFields
  1612  			default:
  1613  				return nil
  1614  			}
  1615  		}
  1616  		file_google_genomics_v1_reads_proto_msgTypes[2].Exporter = func(v interface{}, i int) interface{} {
  1617  			switch v := v.(*ImportReadGroupSetsRequest); i {
  1618  			case 0:
  1619  				return &v.state
  1620  			case 1:
  1621  				return &v.sizeCache
  1622  			case 2:
  1623  				return &v.unknownFields
  1624  			default:
  1625  				return nil
  1626  			}
  1627  		}
  1628  		file_google_genomics_v1_reads_proto_msgTypes[3].Exporter = func(v interface{}, i int) interface{} {
  1629  			switch v := v.(*ImportReadGroupSetsResponse); i {
  1630  			case 0:
  1631  				return &v.state
  1632  			case 1:
  1633  				return &v.sizeCache
  1634  			case 2:
  1635  				return &v.unknownFields
  1636  			default:
  1637  				return nil
  1638  			}
  1639  		}
  1640  		file_google_genomics_v1_reads_proto_msgTypes[4].Exporter = func(v interface{}, i int) interface{} {
  1641  			switch v := v.(*ExportReadGroupSetRequest); i {
  1642  			case 0:
  1643  				return &v.state
  1644  			case 1:
  1645  				return &v.sizeCache
  1646  			case 2:
  1647  				return &v.unknownFields
  1648  			default:
  1649  				return nil
  1650  			}
  1651  		}
  1652  		file_google_genomics_v1_reads_proto_msgTypes[5].Exporter = func(v interface{}, i int) interface{} {
  1653  			switch v := v.(*UpdateReadGroupSetRequest); i {
  1654  			case 0:
  1655  				return &v.state
  1656  			case 1:
  1657  				return &v.sizeCache
  1658  			case 2:
  1659  				return &v.unknownFields
  1660  			default:
  1661  				return nil
  1662  			}
  1663  		}
  1664  		file_google_genomics_v1_reads_proto_msgTypes[6].Exporter = func(v interface{}, i int) interface{} {
  1665  			switch v := v.(*DeleteReadGroupSetRequest); i {
  1666  			case 0:
  1667  				return &v.state
  1668  			case 1:
  1669  				return &v.sizeCache
  1670  			case 2:
  1671  				return &v.unknownFields
  1672  			default:
  1673  				return nil
  1674  			}
  1675  		}
  1676  		file_google_genomics_v1_reads_proto_msgTypes[7].Exporter = func(v interface{}, i int) interface{} {
  1677  			switch v := v.(*GetReadGroupSetRequest); i {
  1678  			case 0:
  1679  				return &v.state
  1680  			case 1:
  1681  				return &v.sizeCache
  1682  			case 2:
  1683  				return &v.unknownFields
  1684  			default:
  1685  				return nil
  1686  			}
  1687  		}
  1688  		file_google_genomics_v1_reads_proto_msgTypes[8].Exporter = func(v interface{}, i int) interface{} {
  1689  			switch v := v.(*ListCoverageBucketsRequest); i {
  1690  			case 0:
  1691  				return &v.state
  1692  			case 1:
  1693  				return &v.sizeCache
  1694  			case 2:
  1695  				return &v.unknownFields
  1696  			default:
  1697  				return nil
  1698  			}
  1699  		}
  1700  		file_google_genomics_v1_reads_proto_msgTypes[9].Exporter = func(v interface{}, i int) interface{} {
  1701  			switch v := v.(*CoverageBucket); i {
  1702  			case 0:
  1703  				return &v.state
  1704  			case 1:
  1705  				return &v.sizeCache
  1706  			case 2:
  1707  				return &v.unknownFields
  1708  			default:
  1709  				return nil
  1710  			}
  1711  		}
  1712  		file_google_genomics_v1_reads_proto_msgTypes[10].Exporter = func(v interface{}, i int) interface{} {
  1713  			switch v := v.(*ListCoverageBucketsResponse); i {
  1714  			case 0:
  1715  				return &v.state
  1716  			case 1:
  1717  				return &v.sizeCache
  1718  			case 2:
  1719  				return &v.unknownFields
  1720  			default:
  1721  				return nil
  1722  			}
  1723  		}
  1724  		file_google_genomics_v1_reads_proto_msgTypes[11].Exporter = func(v interface{}, i int) interface{} {
  1725  			switch v := v.(*SearchReadsRequest); i {
  1726  			case 0:
  1727  				return &v.state
  1728  			case 1:
  1729  				return &v.sizeCache
  1730  			case 2:
  1731  				return &v.unknownFields
  1732  			default:
  1733  				return nil
  1734  			}
  1735  		}
  1736  		file_google_genomics_v1_reads_proto_msgTypes[12].Exporter = func(v interface{}, i int) interface{} {
  1737  			switch v := v.(*SearchReadsResponse); i {
  1738  			case 0:
  1739  				return &v.state
  1740  			case 1:
  1741  				return &v.sizeCache
  1742  			case 2:
  1743  				return &v.unknownFields
  1744  			default:
  1745  				return nil
  1746  			}
  1747  		}
  1748  		file_google_genomics_v1_reads_proto_msgTypes[13].Exporter = func(v interface{}, i int) interface{} {
  1749  			switch v := v.(*StreamReadsRequest); i {
  1750  			case 0:
  1751  				return &v.state
  1752  			case 1:
  1753  				return &v.sizeCache
  1754  			case 2:
  1755  				return &v.unknownFields
  1756  			default:
  1757  				return nil
  1758  			}
  1759  		}
  1760  		file_google_genomics_v1_reads_proto_msgTypes[14].Exporter = func(v interface{}, i int) interface{} {
  1761  			switch v := v.(*StreamReadsResponse); i {
  1762  			case 0:
  1763  				return &v.state
  1764  			case 1:
  1765  				return &v.sizeCache
  1766  			case 2:
  1767  				return &v.unknownFields
  1768  			default:
  1769  				return nil
  1770  			}
  1771  		}
  1772  	}
  1773  	type x struct{}
  1774  	out := protoimpl.TypeBuilder{
  1775  		File: protoimpl.DescBuilder{
  1776  			GoPackagePath: reflect.TypeOf(x{}).PkgPath(),
  1777  			RawDescriptor: file_google_genomics_v1_reads_proto_rawDesc,
  1778  			NumEnums:      1,
  1779  			NumMessages:   15,
  1780  			NumExtensions: 0,
  1781  			NumServices:   2,
  1782  		},
  1783  		GoTypes:           file_google_genomics_v1_reads_proto_goTypes,
  1784  		DependencyIndexes: file_google_genomics_v1_reads_proto_depIdxs,
  1785  		EnumInfos:         file_google_genomics_v1_reads_proto_enumTypes,
  1786  		MessageInfos:      file_google_genomics_v1_reads_proto_msgTypes,
  1787  	}.Build()
  1788  	File_google_genomics_v1_reads_proto = out.File
  1789  	file_google_genomics_v1_reads_proto_rawDesc = nil
  1790  	file_google_genomics_v1_reads_proto_goTypes = nil
  1791  	file_google_genomics_v1_reads_proto_depIdxs = nil
  1792  }
  1793  
  1794  // Reference imports to suppress errors if they are not otherwise used.
  1795  var _ context.Context
  1796  var _ grpc.ClientConnInterface
  1797  
  1798  // This is a compile-time assertion to ensure that this generated file
  1799  // is compatible with the grpc package it is being compiled against.
  1800  const _ = grpc.SupportPackageIsVersion6
  1801  
  1802  // StreamingReadServiceClient is the client API for StreamingReadService service.
  1803  //
  1804  // For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.
  1805  type StreamingReadServiceClient interface {
  1806  	// Returns a stream of all the reads matching the search request, ordered
  1807  	// by reference name, position, and ID.
  1808  	StreamReads(ctx context.Context, in *StreamReadsRequest, opts ...grpc.CallOption) (StreamingReadService_StreamReadsClient, error)
  1809  }
  1810  
  1811  type streamingReadServiceClient struct {
  1812  	cc grpc.ClientConnInterface
  1813  }
  1814  
  1815  func NewStreamingReadServiceClient(cc grpc.ClientConnInterface) StreamingReadServiceClient {
  1816  	return &streamingReadServiceClient{cc}
  1817  }
  1818  
  1819  func (c *streamingReadServiceClient) StreamReads(ctx context.Context, in *StreamReadsRequest, opts ...grpc.CallOption) (StreamingReadService_StreamReadsClient, error) {
  1820  	stream, err := c.cc.NewStream(ctx, &_StreamingReadService_serviceDesc.Streams[0], "/google.genomics.v1.StreamingReadService/StreamReads", opts...)
  1821  	if err != nil {
  1822  		return nil, err
  1823  	}
  1824  	x := &streamingReadServiceStreamReadsClient{stream}
  1825  	if err := x.ClientStream.SendMsg(in); err != nil {
  1826  		return nil, err
  1827  	}
  1828  	if err := x.ClientStream.CloseSend(); err != nil {
  1829  		return nil, err
  1830  	}
  1831  	return x, nil
  1832  }
  1833  
  1834  type StreamingReadService_StreamReadsClient interface {
  1835  	Recv() (*StreamReadsResponse, error)
  1836  	grpc.ClientStream
  1837  }
  1838  
  1839  type streamingReadServiceStreamReadsClient struct {
  1840  	grpc.ClientStream
  1841  }
  1842  
  1843  func (x *streamingReadServiceStreamReadsClient) Recv() (*StreamReadsResponse, error) {
  1844  	m := new(StreamReadsResponse)
  1845  	if err := x.ClientStream.RecvMsg(m); err != nil {
  1846  		return nil, err
  1847  	}
  1848  	return m, nil
  1849  }
  1850  
  1851  // StreamingReadServiceServer is the server API for StreamingReadService service.
  1852  type StreamingReadServiceServer interface {
  1853  	// Returns a stream of all the reads matching the search request, ordered
  1854  	// by reference name, position, and ID.
  1855  	StreamReads(*StreamReadsRequest, StreamingReadService_StreamReadsServer) error
  1856  }
  1857  
  1858  // UnimplementedStreamingReadServiceServer can be embedded to have forward compatible implementations.
  1859  type UnimplementedStreamingReadServiceServer struct {
  1860  }
  1861  
  1862  func (*UnimplementedStreamingReadServiceServer) StreamReads(*StreamReadsRequest, StreamingReadService_StreamReadsServer) error {
  1863  	return status.Errorf(codes.Unimplemented, "method StreamReads not implemented")
  1864  }
  1865  
  1866  func RegisterStreamingReadServiceServer(s *grpc.Server, srv StreamingReadServiceServer) {
  1867  	s.RegisterService(&_StreamingReadService_serviceDesc, srv)
  1868  }
  1869  
  1870  func _StreamingReadService_StreamReads_Handler(srv interface{}, stream grpc.ServerStream) error {
  1871  	m := new(StreamReadsRequest)
  1872  	if err := stream.RecvMsg(m); err != nil {
  1873  		return err
  1874  	}
  1875  	return srv.(StreamingReadServiceServer).StreamReads(m, &streamingReadServiceStreamReadsServer{stream})
  1876  }
  1877  
  1878  type StreamingReadService_StreamReadsServer interface {
  1879  	Send(*StreamReadsResponse) error
  1880  	grpc.ServerStream
  1881  }
  1882  
  1883  type streamingReadServiceStreamReadsServer struct {
  1884  	grpc.ServerStream
  1885  }
  1886  
  1887  func (x *streamingReadServiceStreamReadsServer) Send(m *StreamReadsResponse) error {
  1888  	return x.ServerStream.SendMsg(m)
  1889  }
  1890  
  1891  var _StreamingReadService_serviceDesc = grpc.ServiceDesc{
  1892  	ServiceName: "google.genomics.v1.StreamingReadService",
  1893  	HandlerType: (*StreamingReadServiceServer)(nil),
  1894  	Methods:     []grpc.MethodDesc{},
  1895  	Streams: []grpc.StreamDesc{
  1896  		{
  1897  			StreamName:    "StreamReads",
  1898  			Handler:       _StreamingReadService_StreamReads_Handler,
  1899  			ServerStreams: true,
  1900  		},
  1901  	},
  1902  	Metadata: "google/genomics/v1/reads.proto",
  1903  }
  1904  
  1905  // ReadServiceV1Client is the client API for ReadServiceV1 service.
  1906  //
  1907  // For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.
  1908  type ReadServiceV1Client interface {
  1909  	// Creates read group sets by asynchronously importing the provided
  1910  	// information.
  1911  	//
  1912  	// For the definitions of read group sets and other genomics resources, see
  1913  	// [Fundamentals of Google
  1914  	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
  1915  	//
  1916  	// The caller must have WRITE permissions to the dataset.
  1917  	//
  1918  	// ## Notes on [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf) import
  1919  	//
  1920  	// - Tags will be converted to strings - tag types are not preserved
  1921  	// - Comments (`@CO`) in the input file header will not be preserved
  1922  	// - Original header order of references (`@SQ`) will not be preserved
  1923  	// - Any reverse stranded unmapped reads will be reverse complemented, and
  1924  	// their qualities (also the "BQ" and "OQ" tags, if any) will be reversed
  1925  	// - Unmapped reads will be stripped of positional information (reference name
  1926  	// and position)
  1927  	ImportReadGroupSets(ctx context.Context, in *ImportReadGroupSetsRequest, opts ...grpc.CallOption) (*longrunningpb.Operation, error)
  1928  	// Exports a read group set to a BAM file in Google Cloud Storage.
  1929  	//
  1930  	// For the definitions of read group sets and other genomics resources, see
  1931  	// [Fundamentals of Google
  1932  	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
  1933  	//
  1934  	// Note that currently there may be some differences between exported BAM
  1935  	// files and the original BAM file at the time of import. See
  1936  	// [ImportReadGroupSets][google.genomics.v1.ReadServiceV1.ImportReadGroupSets]
  1937  	// for caveats.
  1938  	ExportReadGroupSet(ctx context.Context, in *ExportReadGroupSetRequest, opts ...grpc.CallOption) (*longrunningpb.Operation, error)
  1939  	// Searches for read group sets matching the criteria.
  1940  	//
  1941  	// For the definitions of read group sets and other genomics resources, see
  1942  	// [Fundamentals of Google
  1943  	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
  1944  	//
  1945  	// Implements
  1946  	// [GlobalAllianceApi.searchReadGroupSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L135).
  1947  	SearchReadGroupSets(ctx context.Context, in *SearchReadGroupSetsRequest, opts ...grpc.CallOption) (*SearchReadGroupSetsResponse, error)
  1948  	// Updates a read group set.
  1949  	//
  1950  	// For the definitions of read group sets and other genomics resources, see
  1951  	// [Fundamentals of Google
  1952  	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
  1953  	//
  1954  	// This method supports patch semantics.
  1955  	UpdateReadGroupSet(ctx context.Context, in *UpdateReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error)
  1956  	// Deletes a read group set.
  1957  	//
  1958  	// For the definitions of read group sets and other genomics resources, see
  1959  	// [Fundamentals of Google
  1960  	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
  1961  	DeleteReadGroupSet(ctx context.Context, in *DeleteReadGroupSetRequest, opts ...grpc.CallOption) (*emptypb.Empty, error)
  1962  	// Gets a read group set by ID.
  1963  	//
  1964  	// For the definitions of read group sets and other genomics resources, see
  1965  	// [Fundamentals of Google
  1966  	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
  1967  	GetReadGroupSet(ctx context.Context, in *GetReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error)
  1968  	// Lists fixed width coverage buckets for a read group set, each of which
  1969  	// correspond to a range of a reference sequence. Each bucket summarizes
  1970  	// coverage information across its corresponding genomic range.
  1971  	//
  1972  	// For the definitions of read group sets and other genomics resources, see
  1973  	// [Fundamentals of Google
  1974  	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
  1975  	//
  1976  	// Coverage is defined as the number of reads which are aligned to a given
  1977  	// base in the reference sequence. Coverage buckets are available at several
  1978  	// precomputed bucket widths, enabling retrieval of various coverage 'zoom
  1979  	// levels'. The caller must have READ permissions for the target read group
  1980  	// set.
  1981  	ListCoverageBuckets(ctx context.Context, in *ListCoverageBucketsRequest, opts ...grpc.CallOption) (*ListCoverageBucketsResponse, error)
  1982  	// Gets a list of reads for one or more read group sets.
  1983  	//
  1984  	// For the definitions of read group sets and other genomics resources, see
  1985  	// [Fundamentals of Google
  1986  	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
  1987  	//
  1988  	// Reads search operates over a genomic coordinate space of reference sequence
  1989  	// & position defined over the reference sequences to which the requested
  1990  	// read group sets are aligned.
  1991  	//
  1992  	// If a target positional range is specified, search returns all reads whose
  1993  	// alignment to the reference genome overlap the range. A query which
  1994  	// specifies only read group set IDs yields all reads in those read group
  1995  	// sets, including unmapped reads.
  1996  	//
  1997  	// All reads returned (including reads on subsequent pages) are ordered by
  1998  	// genomic coordinate (by reference sequence, then position). Reads with
  1999  	// equivalent genomic coordinates are returned in an unspecified order. This
  2000  	// order is consistent, such that two queries for the same content (regardless
  2001  	// of page size) yield reads in the same order across their respective streams
  2002  	// of paginated responses.
  2003  	//
  2004  	// Implements
  2005  	// [GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L85).
  2006  	SearchReads(ctx context.Context, in *SearchReadsRequest, opts ...grpc.CallOption) (*SearchReadsResponse, error)
  2007  }
  2008  
  2009  type readServiceV1Client struct {
  2010  	cc grpc.ClientConnInterface
  2011  }
  2012  
  2013  func NewReadServiceV1Client(cc grpc.ClientConnInterface) ReadServiceV1Client {
  2014  	return &readServiceV1Client{cc}
  2015  }
  2016  
  2017  func (c *readServiceV1Client) ImportReadGroupSets(ctx context.Context, in *ImportReadGroupSetsRequest, opts ...grpc.CallOption) (*longrunningpb.Operation, error) {
  2018  	out := new(longrunningpb.Operation)
  2019  	err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/ImportReadGroupSets", in, out, opts...)
  2020  	if err != nil {
  2021  		return nil, err
  2022  	}
  2023  	return out, nil
  2024  }
  2025  
  2026  func (c *readServiceV1Client) ExportReadGroupSet(ctx context.Context, in *ExportReadGroupSetRequest, opts ...grpc.CallOption) (*longrunningpb.Operation, error) {
  2027  	out := new(longrunningpb.Operation)
  2028  	err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/ExportReadGroupSet", in, out, opts...)
  2029  	if err != nil {
  2030  		return nil, err
  2031  	}
  2032  	return out, nil
  2033  }
  2034  
  2035  func (c *readServiceV1Client) SearchReadGroupSets(ctx context.Context, in *SearchReadGroupSetsRequest, opts ...grpc.CallOption) (*SearchReadGroupSetsResponse, error) {
  2036  	out := new(SearchReadGroupSetsResponse)
  2037  	err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/SearchReadGroupSets", in, out, opts...)
  2038  	if err != nil {
  2039  		return nil, err
  2040  	}
  2041  	return out, nil
  2042  }
  2043  
  2044  func (c *readServiceV1Client) UpdateReadGroupSet(ctx context.Context, in *UpdateReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error) {
  2045  	out := new(ReadGroupSet)
  2046  	err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/UpdateReadGroupSet", in, out, opts...)
  2047  	if err != nil {
  2048  		return nil, err
  2049  	}
  2050  	return out, nil
  2051  }
  2052  
  2053  func (c *readServiceV1Client) DeleteReadGroupSet(ctx context.Context, in *DeleteReadGroupSetRequest, opts ...grpc.CallOption) (*emptypb.Empty, error) {
  2054  	out := new(emptypb.Empty)
  2055  	err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/DeleteReadGroupSet", in, out, opts...)
  2056  	if err != nil {
  2057  		return nil, err
  2058  	}
  2059  	return out, nil
  2060  }
  2061  
  2062  func (c *readServiceV1Client) GetReadGroupSet(ctx context.Context, in *GetReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error) {
  2063  	out := new(ReadGroupSet)
  2064  	err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/GetReadGroupSet", in, out, opts...)
  2065  	if err != nil {
  2066  		return nil, err
  2067  	}
  2068  	return out, nil
  2069  }
  2070  
  2071  func (c *readServiceV1Client) ListCoverageBuckets(ctx context.Context, in *ListCoverageBucketsRequest, opts ...grpc.CallOption) (*ListCoverageBucketsResponse, error) {
  2072  	out := new(ListCoverageBucketsResponse)
  2073  	err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/ListCoverageBuckets", in, out, opts...)
  2074  	if err != nil {
  2075  		return nil, err
  2076  	}
  2077  	return out, nil
  2078  }
  2079  
  2080  func (c *readServiceV1Client) SearchReads(ctx context.Context, in *SearchReadsRequest, opts ...grpc.CallOption) (*SearchReadsResponse, error) {
  2081  	out := new(SearchReadsResponse)
  2082  	err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/SearchReads", in, out, opts...)
  2083  	if err != nil {
  2084  		return nil, err
  2085  	}
  2086  	return out, nil
  2087  }
  2088  
  2089  // ReadServiceV1Server is the server API for ReadServiceV1 service.
  2090  type ReadServiceV1Server interface {
  2091  	// Creates read group sets by asynchronously importing the provided
  2092  	// information.
  2093  	//
  2094  	// For the definitions of read group sets and other genomics resources, see
  2095  	// [Fundamentals of Google
  2096  	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
  2097  	//
  2098  	// The caller must have WRITE permissions to the dataset.
  2099  	//
  2100  	// ## Notes on [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf) import
  2101  	//
  2102  	// - Tags will be converted to strings - tag types are not preserved
  2103  	// - Comments (`@CO`) in the input file header will not be preserved
  2104  	// - Original header order of references (`@SQ`) will not be preserved
  2105  	// - Any reverse stranded unmapped reads will be reverse complemented, and
  2106  	// their qualities (also the "BQ" and "OQ" tags, if any) will be reversed
  2107  	// - Unmapped reads will be stripped of positional information (reference name
  2108  	// and position)
  2109  	ImportReadGroupSets(context.Context, *ImportReadGroupSetsRequest) (*longrunningpb.Operation, error)
  2110  	// Exports a read group set to a BAM file in Google Cloud Storage.
  2111  	//
  2112  	// For the definitions of read group sets and other genomics resources, see
  2113  	// [Fundamentals of Google
  2114  	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
  2115  	//
  2116  	// Note that currently there may be some differences between exported BAM
  2117  	// files and the original BAM file at the time of import. See
  2118  	// [ImportReadGroupSets][google.genomics.v1.ReadServiceV1.ImportReadGroupSets]
  2119  	// for caveats.
  2120  	ExportReadGroupSet(context.Context, *ExportReadGroupSetRequest) (*longrunningpb.Operation, error)
  2121  	// Searches for read group sets matching the criteria.
  2122  	//
  2123  	// For the definitions of read group sets and other genomics resources, see
  2124  	// [Fundamentals of Google
  2125  	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
  2126  	//
  2127  	// Implements
  2128  	// [GlobalAllianceApi.searchReadGroupSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L135).
  2129  	SearchReadGroupSets(context.Context, *SearchReadGroupSetsRequest) (*SearchReadGroupSetsResponse, error)
  2130  	// Updates a read group set.
  2131  	//
  2132  	// For the definitions of read group sets and other genomics resources, see
  2133  	// [Fundamentals of Google
  2134  	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
  2135  	//
  2136  	// This method supports patch semantics.
  2137  	UpdateReadGroupSet(context.Context, *UpdateReadGroupSetRequest) (*ReadGroupSet, error)
  2138  	// Deletes a read group set.
  2139  	//
  2140  	// For the definitions of read group sets and other genomics resources, see
  2141  	// [Fundamentals of Google
  2142  	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
  2143  	DeleteReadGroupSet(context.Context, *DeleteReadGroupSetRequest) (*emptypb.Empty, error)
  2144  	// Gets a read group set by ID.
  2145  	//
  2146  	// For the definitions of read group sets and other genomics resources, see
  2147  	// [Fundamentals of Google
  2148  	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
  2149  	GetReadGroupSet(context.Context, *GetReadGroupSetRequest) (*ReadGroupSet, error)
  2150  	// Lists fixed width coverage buckets for a read group set, each of which
  2151  	// correspond to a range of a reference sequence. Each bucket summarizes
  2152  	// coverage information across its corresponding genomic range.
  2153  	//
  2154  	// For the definitions of read group sets and other genomics resources, see
  2155  	// [Fundamentals of Google
  2156  	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
  2157  	//
  2158  	// Coverage is defined as the number of reads which are aligned to a given
  2159  	// base in the reference sequence. Coverage buckets are available at several
  2160  	// precomputed bucket widths, enabling retrieval of various coverage 'zoom
  2161  	// levels'. The caller must have READ permissions for the target read group
  2162  	// set.
  2163  	ListCoverageBuckets(context.Context, *ListCoverageBucketsRequest) (*ListCoverageBucketsResponse, error)
  2164  	// Gets a list of reads for one or more read group sets.
  2165  	//
  2166  	// For the definitions of read group sets and other genomics resources, see
  2167  	// [Fundamentals of Google
  2168  	// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
  2169  	//
  2170  	// Reads search operates over a genomic coordinate space of reference sequence
  2171  	// & position defined over the reference sequences to which the requested
  2172  	// read group sets are aligned.
  2173  	//
  2174  	// If a target positional range is specified, search returns all reads whose
  2175  	// alignment to the reference genome overlap the range. A query which
  2176  	// specifies only read group set IDs yields all reads in those read group
  2177  	// sets, including unmapped reads.
  2178  	//
  2179  	// All reads returned (including reads on subsequent pages) are ordered by
  2180  	// genomic coordinate (by reference sequence, then position). Reads with
  2181  	// equivalent genomic coordinates are returned in an unspecified order. This
  2182  	// order is consistent, such that two queries for the same content (regardless
  2183  	// of page size) yield reads in the same order across their respective streams
  2184  	// of paginated responses.
  2185  	//
  2186  	// Implements
  2187  	// [GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L85).
  2188  	SearchReads(context.Context, *SearchReadsRequest) (*SearchReadsResponse, error)
  2189  }
  2190  
  2191  // UnimplementedReadServiceV1Server can be embedded to have forward compatible implementations.
  2192  type UnimplementedReadServiceV1Server struct {
  2193  }
  2194  
  2195  func (*UnimplementedReadServiceV1Server) ImportReadGroupSets(context.Context, *ImportReadGroupSetsRequest) (*longrunningpb.Operation, error) {
  2196  	return nil, status.Errorf(codes.Unimplemented, "method ImportReadGroupSets not implemented")
  2197  }
  2198  func (*UnimplementedReadServiceV1Server) ExportReadGroupSet(context.Context, *ExportReadGroupSetRequest) (*longrunningpb.Operation, error) {
  2199  	return nil, status.Errorf(codes.Unimplemented, "method ExportReadGroupSet not implemented")
  2200  }
  2201  func (*UnimplementedReadServiceV1Server) SearchReadGroupSets(context.Context, *SearchReadGroupSetsRequest) (*SearchReadGroupSetsResponse, error) {
  2202  	return nil, status.Errorf(codes.Unimplemented, "method SearchReadGroupSets not implemented")
  2203  }
  2204  func (*UnimplementedReadServiceV1Server) UpdateReadGroupSet(context.Context, *UpdateReadGroupSetRequest) (*ReadGroupSet, error) {
  2205  	return nil, status.Errorf(codes.Unimplemented, "method UpdateReadGroupSet not implemented")
  2206  }
  2207  func (*UnimplementedReadServiceV1Server) DeleteReadGroupSet(context.Context, *DeleteReadGroupSetRequest) (*emptypb.Empty, error) {
  2208  	return nil, status.Errorf(codes.Unimplemented, "method DeleteReadGroupSet not implemented")
  2209  }
  2210  func (*UnimplementedReadServiceV1Server) GetReadGroupSet(context.Context, *GetReadGroupSetRequest) (*ReadGroupSet, error) {
  2211  	return nil, status.Errorf(codes.Unimplemented, "method GetReadGroupSet not implemented")
  2212  }
  2213  func (*UnimplementedReadServiceV1Server) ListCoverageBuckets(context.Context, *ListCoverageBucketsRequest) (*ListCoverageBucketsResponse, error) {
  2214  	return nil, status.Errorf(codes.Unimplemented, "method ListCoverageBuckets not implemented")
  2215  }
  2216  func (*UnimplementedReadServiceV1Server) SearchReads(context.Context, *SearchReadsRequest) (*SearchReadsResponse, error) {
  2217  	return nil, status.Errorf(codes.Unimplemented, "method SearchReads not implemented")
  2218  }
  2219  
  2220  func RegisterReadServiceV1Server(s *grpc.Server, srv ReadServiceV1Server) {
  2221  	s.RegisterService(&_ReadServiceV1_serviceDesc, srv)
  2222  }
  2223  
  2224  func _ReadServiceV1_ImportReadGroupSets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
  2225  	in := new(ImportReadGroupSetsRequest)
  2226  	if err := dec(in); err != nil {
  2227  		return nil, err
  2228  	}
  2229  	if interceptor == nil {
  2230  		return srv.(ReadServiceV1Server).ImportReadGroupSets(ctx, in)
  2231  	}
  2232  	info := &grpc.UnaryServerInfo{
  2233  		Server:     srv,
  2234  		FullMethod: "/google.genomics.v1.ReadServiceV1/ImportReadGroupSets",
  2235  	}
  2236  	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
  2237  		return srv.(ReadServiceV1Server).ImportReadGroupSets(ctx, req.(*ImportReadGroupSetsRequest))
  2238  	}
  2239  	return interceptor(ctx, in, info, handler)
  2240  }
  2241  
  2242  func _ReadServiceV1_ExportReadGroupSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
  2243  	in := new(ExportReadGroupSetRequest)
  2244  	if err := dec(in); err != nil {
  2245  		return nil, err
  2246  	}
  2247  	if interceptor == nil {
  2248  		return srv.(ReadServiceV1Server).ExportReadGroupSet(ctx, in)
  2249  	}
  2250  	info := &grpc.UnaryServerInfo{
  2251  		Server:     srv,
  2252  		FullMethod: "/google.genomics.v1.ReadServiceV1/ExportReadGroupSet",
  2253  	}
  2254  	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
  2255  		return srv.(ReadServiceV1Server).ExportReadGroupSet(ctx, req.(*ExportReadGroupSetRequest))
  2256  	}
  2257  	return interceptor(ctx, in, info, handler)
  2258  }
  2259  
  2260  func _ReadServiceV1_SearchReadGroupSets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
  2261  	in := new(SearchReadGroupSetsRequest)
  2262  	if err := dec(in); err != nil {
  2263  		return nil, err
  2264  	}
  2265  	if interceptor == nil {
  2266  		return srv.(ReadServiceV1Server).SearchReadGroupSets(ctx, in)
  2267  	}
  2268  	info := &grpc.UnaryServerInfo{
  2269  		Server:     srv,
  2270  		FullMethod: "/google.genomics.v1.ReadServiceV1/SearchReadGroupSets",
  2271  	}
  2272  	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
  2273  		return srv.(ReadServiceV1Server).SearchReadGroupSets(ctx, req.(*SearchReadGroupSetsRequest))
  2274  	}
  2275  	return interceptor(ctx, in, info, handler)
  2276  }
  2277  
  2278  func _ReadServiceV1_UpdateReadGroupSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
  2279  	in := new(UpdateReadGroupSetRequest)
  2280  	if err := dec(in); err != nil {
  2281  		return nil, err
  2282  	}
  2283  	if interceptor == nil {
  2284  		return srv.(ReadServiceV1Server).UpdateReadGroupSet(ctx, in)
  2285  	}
  2286  	info := &grpc.UnaryServerInfo{
  2287  		Server:     srv,
  2288  		FullMethod: "/google.genomics.v1.ReadServiceV1/UpdateReadGroupSet",
  2289  	}
  2290  	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
  2291  		return srv.(ReadServiceV1Server).UpdateReadGroupSet(ctx, req.(*UpdateReadGroupSetRequest))
  2292  	}
  2293  	return interceptor(ctx, in, info, handler)
  2294  }
  2295  
  2296  func _ReadServiceV1_DeleteReadGroupSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
  2297  	in := new(DeleteReadGroupSetRequest)
  2298  	if err := dec(in); err != nil {
  2299  		return nil, err
  2300  	}
  2301  	if interceptor == nil {
  2302  		return srv.(ReadServiceV1Server).DeleteReadGroupSet(ctx, in)
  2303  	}
  2304  	info := &grpc.UnaryServerInfo{
  2305  		Server:     srv,
  2306  		FullMethod: "/google.genomics.v1.ReadServiceV1/DeleteReadGroupSet",
  2307  	}
  2308  	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
  2309  		return srv.(ReadServiceV1Server).DeleteReadGroupSet(ctx, req.(*DeleteReadGroupSetRequest))
  2310  	}
  2311  	return interceptor(ctx, in, info, handler)
  2312  }
  2313  
  2314  func _ReadServiceV1_GetReadGroupSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
  2315  	in := new(GetReadGroupSetRequest)
  2316  	if err := dec(in); err != nil {
  2317  		return nil, err
  2318  	}
  2319  	if interceptor == nil {
  2320  		return srv.(ReadServiceV1Server).GetReadGroupSet(ctx, in)
  2321  	}
  2322  	info := &grpc.UnaryServerInfo{
  2323  		Server:     srv,
  2324  		FullMethod: "/google.genomics.v1.ReadServiceV1/GetReadGroupSet",
  2325  	}
  2326  	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
  2327  		return srv.(ReadServiceV1Server).GetReadGroupSet(ctx, req.(*GetReadGroupSetRequest))
  2328  	}
  2329  	return interceptor(ctx, in, info, handler)
  2330  }
  2331  
  2332  func _ReadServiceV1_ListCoverageBuckets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
  2333  	in := new(ListCoverageBucketsRequest)
  2334  	if err := dec(in); err != nil {
  2335  		return nil, err
  2336  	}
  2337  	if interceptor == nil {
  2338  		return srv.(ReadServiceV1Server).ListCoverageBuckets(ctx, in)
  2339  	}
  2340  	info := &grpc.UnaryServerInfo{
  2341  		Server:     srv,
  2342  		FullMethod: "/google.genomics.v1.ReadServiceV1/ListCoverageBuckets",
  2343  	}
  2344  	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
  2345  		return srv.(ReadServiceV1Server).ListCoverageBuckets(ctx, req.(*ListCoverageBucketsRequest))
  2346  	}
  2347  	return interceptor(ctx, in, info, handler)
  2348  }
  2349  
  2350  func _ReadServiceV1_SearchReads_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
  2351  	in := new(SearchReadsRequest)
  2352  	if err := dec(in); err != nil {
  2353  		return nil, err
  2354  	}
  2355  	if interceptor == nil {
  2356  		return srv.(ReadServiceV1Server).SearchReads(ctx, in)
  2357  	}
  2358  	info := &grpc.UnaryServerInfo{
  2359  		Server:     srv,
  2360  		FullMethod: "/google.genomics.v1.ReadServiceV1/SearchReads",
  2361  	}
  2362  	handler := func(ctx context.Context, req interface{}) (interface{}, error) {
  2363  		return srv.(ReadServiceV1Server).SearchReads(ctx, req.(*SearchReadsRequest))
  2364  	}
  2365  	return interceptor(ctx, in, info, handler)
  2366  }
  2367  
  2368  var _ReadServiceV1_serviceDesc = grpc.ServiceDesc{
  2369  	ServiceName: "google.genomics.v1.ReadServiceV1",
  2370  	HandlerType: (*ReadServiceV1Server)(nil),
  2371  	Methods: []grpc.MethodDesc{
  2372  		{
  2373  			MethodName: "ImportReadGroupSets",
  2374  			Handler:    _ReadServiceV1_ImportReadGroupSets_Handler,
  2375  		},
  2376  		{
  2377  			MethodName: "ExportReadGroupSet",
  2378  			Handler:    _ReadServiceV1_ExportReadGroupSet_Handler,
  2379  		},
  2380  		{
  2381  			MethodName: "SearchReadGroupSets",
  2382  			Handler:    _ReadServiceV1_SearchReadGroupSets_Handler,
  2383  		},
  2384  		{
  2385  			MethodName: "UpdateReadGroupSet",
  2386  			Handler:    _ReadServiceV1_UpdateReadGroupSet_Handler,
  2387  		},
  2388  		{
  2389  			MethodName: "DeleteReadGroupSet",
  2390  			Handler:    _ReadServiceV1_DeleteReadGroupSet_Handler,
  2391  		},
  2392  		{
  2393  			MethodName: "GetReadGroupSet",
  2394  			Handler:    _ReadServiceV1_GetReadGroupSet_Handler,
  2395  		},
  2396  		{
  2397  			MethodName: "ListCoverageBuckets",
  2398  			Handler:    _ReadServiceV1_ListCoverageBuckets_Handler,
  2399  		},
  2400  		{
  2401  			MethodName: "SearchReads",
  2402  			Handler:    _ReadServiceV1_SearchReads_Handler,
  2403  		},
  2404  	},
  2405  	Streams:  []grpc.StreamDesc{},
  2406  	Metadata: "google/genomics/v1/reads.proto",
  2407  }
  2408  

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