readgroupset.pb.go

Documentation: google.golang.org/genproto/googleapis/genomics/v1

     1  // Copyright 2024 Google LLC
     2  //
     3  // Licensed under the Apache License, Version 2.0 (the "License");
     4  // you may not use this file except in compliance with the License.
     5  // You may obtain a copy of the License at
     6  //
     7  //     http://www.apache.org/licenses/LICENSE-2.0
     8  //
     9  // Unless required by applicable law or agreed to in writing, software
    10  // distributed under the License is distributed on an "AS IS" BASIS,
    11  // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
    12  // See the License for the specific language governing permissions and
    13  // limitations under the License.
    14  
    15  // Code generated by protoc-gen-go. DO NOT EDIT.
    16  // versions:
    17  // 	protoc-gen-go v1.26.0
    18  // 	protoc        v4.24.4
    19  // source: google/genomics/v1/readgroupset.proto
    20  
    21  package genomics
    22  
    23  import (
    24  	reflect "reflect"
    25  	sync "sync"
    26  
    27  	_ "google.golang.org/genproto/googleapis/api/annotations"
    28  	protoreflect "google.golang.org/protobuf/reflect/protoreflect"
    29  	protoimpl "google.golang.org/protobuf/runtime/protoimpl"
    30  	structpb "google.golang.org/protobuf/types/known/structpb"
    31  )
    32  
    33  const (
    34  	// Verify that this generated code is sufficiently up-to-date.
    35  	_ = protoimpl.EnforceVersion(20 - protoimpl.MinVersion)
    36  	// Verify that runtime/protoimpl is sufficiently up-to-date.
    37  	_ = protoimpl.EnforceVersion(protoimpl.MaxVersion - 20)
    38  )
    39  
    40  // A read group set is a logical collection of read groups, which are
    41  // collections of reads produced by a sequencer. A read group set typically
    42  // models reads corresponding to one sample, sequenced one way, and aligned one
    43  // way.
    44  //
    45  // * A read group set belongs to one dataset.
    46  // * A read group belongs to one read group set.
    47  // * A read belongs to one read group.
    48  //
    49  // For more genomics resource definitions, see [Fundamentals of Google
    50  // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    51  type ReadGroupSet struct {
    52  	state         protoimpl.MessageState
    53  	sizeCache     protoimpl.SizeCache
    54  	unknownFields protoimpl.UnknownFields
    55  
    56  	// The server-generated read group set ID, unique for all read group sets.
    57  	Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
    58  	// The dataset to which this read group set belongs.
    59  	DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
    60  	// The reference set to which the reads in this read group set are aligned.
    61  	ReferenceSetId string `protobuf:"bytes,3,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
    62  	// The read group set name. By default this will be initialized to the sample
    63  	// name of the sequenced data contained in this set.
    64  	Name string `protobuf:"bytes,4,opt,name=name,proto3" json:"name,omitempty"`
    65  	// The filename of the original source file for this read group set, if any.
    66  	Filename string `protobuf:"bytes,5,opt,name=filename,proto3" json:"filename,omitempty"`
    67  	// The read groups in this set. There are typically 1-10 read groups in a read
    68  	// group set.
    69  	ReadGroups []*ReadGroup `protobuf:"bytes,6,rep,name=read_groups,json=readGroups,proto3" json:"read_groups,omitempty"`
    70  	// A map of additional read group set information.
    71  	Info map[string]*structpb.ListValue `protobuf:"bytes,7,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
    72  }
    73  
    74  func (x *ReadGroupSet) Reset() {
    75  	*x = ReadGroupSet{}
    76  	if protoimpl.UnsafeEnabled {
    77  		mi := &file_google_genomics_v1_readgroupset_proto_msgTypes[0]
    78  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
    79  		ms.StoreMessageInfo(mi)
    80  	}
    81  }
    82  
    83  func (x *ReadGroupSet) String() string {
    84  	return protoimpl.X.MessageStringOf(x)
    85  }
    86  
    87  func (*ReadGroupSet) ProtoMessage() {}
    88  
    89  func (x *ReadGroupSet) ProtoReflect() protoreflect.Message {
    90  	mi := &file_google_genomics_v1_readgroupset_proto_msgTypes[0]
    91  	if protoimpl.UnsafeEnabled && x != nil {
    92  		ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x))
    93  		if ms.LoadMessageInfo() == nil {
    94  			ms.StoreMessageInfo(mi)
    95  		}
    96  		return ms
    97  	}
    98  	return mi.MessageOf(x)
    99  }
   100  
   101  // Deprecated: Use ReadGroupSet.ProtoReflect.Descriptor instead.
   102  func (*ReadGroupSet) Descriptor() ([]byte, []int) {
   103  	return file_google_genomics_v1_readgroupset_proto_rawDescGZIP(), []int{0}
   104  }
   105  
   106  func (x *ReadGroupSet) GetId() string {
   107  	if x != nil {
   108  		return x.Id
   109  	}
   110  	return ""
   111  }
   112  
   113  func (x *ReadGroupSet) GetDatasetId() string {
   114  	if x != nil {
   115  		return x.DatasetId
   116  	}
   117  	return ""
   118  }
   119  
   120  func (x *ReadGroupSet) GetReferenceSetId() string {
   121  	if x != nil {
   122  		return x.ReferenceSetId
   123  	}
   124  	return ""
   125  }
   126  
   127  func (x *ReadGroupSet) GetName() string {
   128  	if x != nil {
   129  		return x.Name
   130  	}
   131  	return ""
   132  }
   133  
   134  func (x *ReadGroupSet) GetFilename() string {
   135  	if x != nil {
   136  		return x.Filename
   137  	}
   138  	return ""
   139  }
   140  
   141  func (x *ReadGroupSet) GetReadGroups() []*ReadGroup {
   142  	if x != nil {
   143  		return x.ReadGroups
   144  	}
   145  	return nil
   146  }
   147  
   148  func (x *ReadGroupSet) GetInfo() map[string]*structpb.ListValue {
   149  	if x != nil {
   150  		return x.Info
   151  	}
   152  	return nil
   153  }
   154  
   155  var File_google_genomics_v1_readgroupset_proto protoreflect.FileDescriptor
   156  
   157  var file_google_genomics_v1_readgroupset_proto_rawDesc = []byte{
   158  	0x0a, 0x25, 0x67, 0x6f, 0x6f, 0x67, 0x6c, 0x65, 0x2f, 0x67, 0x65, 0x6e, 0x6f, 0x6d, 0x69, 0x63,
   159  	0x73, 0x2f, 0x76, 0x31, 0x2f, 0x72, 0x65, 0x61, 0x64, 0x67, 0x72, 0x6f, 0x75, 0x70, 0x73, 0x65,
   160  	0x74, 0x2e, 0x70, 0x72, 0x6f, 0x74, 0x6f, 0x12, 0x12, 0x67, 0x6f, 0x6f, 0x67, 0x6c, 0x65, 0x2e,
   161  	0x67, 0x65, 0x6e, 0x6f, 0x6d, 0x69, 0x63, 0x73, 0x2e, 0x76, 0x31, 0x1a, 0x1c, 0x67, 0x6f, 0x6f,
   162  	0x67, 0x6c, 0x65, 0x2f, 0x61, 0x70, 0x69, 0x2f, 0x61, 0x6e, 0x6e, 0x6f, 0x74, 0x61, 0x74, 0x69,
   163  	0x6f, 0x6e, 0x73, 0x2e, 0x70, 0x72, 0x6f, 0x74, 0x6f, 0x1a, 0x22, 0x67, 0x6f, 0x6f, 0x67, 0x6c,
   164  	0x65, 0x2f, 0x67, 0x65, 0x6e, 0x6f, 0x6d, 0x69, 0x63, 0x73, 0x2f, 0x76, 0x31, 0x2f, 0x72, 0x65,
   165  	0x61, 0x64, 0x67, 0x72, 0x6f, 0x75, 0x70, 0x2e, 0x70, 0x72, 0x6f, 0x74, 0x6f, 0x1a, 0x1c, 0x67,
   166  	0x6f, 0x6f, 0x67, 0x6c, 0x65, 0x2f, 0x70, 0x72, 0x6f, 0x74, 0x6f, 0x62, 0x75, 0x66, 0x2f, 0x73,
   167  	0x74, 0x72, 0x75, 0x63, 0x74, 0x2e, 0x70, 0x72, 0x6f, 0x74, 0x6f, 0x22, 0xec, 0x02, 0x0a, 0x0c,
   168  	0x52, 0x65, 0x61, 0x64, 0x47, 0x72, 0x6f, 0x75, 0x70, 0x53, 0x65, 0x74, 0x12, 0x0e, 0x0a, 0x02,
   169  	0x69, 0x64, 0x18, 0x01, 0x20, 0x01, 0x28, 0x09, 0x52, 0x02, 0x69, 0x64, 0x12, 0x1d, 0x0a, 0x0a,
   170  	0x64, 0x61, 0x74, 0x61, 0x73, 0x65, 0x74, 0x5f, 0x69, 0x64, 0x18, 0x02, 0x20, 0x01, 0x28, 0x09,
   171  	0x52, 0x09, 0x64, 0x61, 0x74, 0x61, 0x73, 0x65, 0x74, 0x49, 0x64, 0x12, 0x28, 0x0a, 0x10, 0x72,
   172  	0x65, 0x66, 0x65, 0x72, 0x65, 0x6e, 0x63, 0x65, 0x5f, 0x73, 0x65, 0x74, 0x5f, 0x69, 0x64, 0x18,
   173  	0x03, 0x20, 0x01, 0x28, 0x09, 0x52, 0x0e, 0x72, 0x65, 0x66, 0x65, 0x72, 0x65, 0x6e, 0x63, 0x65,
   174  	0x53, 0x65, 0x74, 0x49, 0x64, 0x12, 0x12, 0x0a, 0x04, 0x6e, 0x61, 0x6d, 0x65, 0x18, 0x04, 0x20,
   175  	0x01, 0x28, 0x09, 0x52, 0x04, 0x6e, 0x61, 0x6d, 0x65, 0x12, 0x1a, 0x0a, 0x08, 0x66, 0x69, 0x6c,
   176  	0x65, 0x6e, 0x61, 0x6d, 0x65, 0x18, 0x05, 0x20, 0x01, 0x28, 0x09, 0x52, 0x08, 0x66, 0x69, 0x6c,
   177  	0x65, 0x6e, 0x61, 0x6d, 0x65, 0x12, 0x3e, 0x0a, 0x0b, 0x72, 0x65, 0x61, 0x64, 0x5f, 0x67, 0x72,
   178  	0x6f, 0x75, 0x70, 0x73, 0x18, 0x06, 0x20, 0x03, 0x28, 0x0b, 0x32, 0x1d, 0x2e, 0x67, 0x6f, 0x6f,
   179  	0x67, 0x6c, 0x65, 0x2e, 0x67, 0x65, 0x6e, 0x6f, 0x6d, 0x69, 0x63, 0x73, 0x2e, 0x76, 0x31, 0x2e,
   180  	0x52, 0x65, 0x61, 0x64, 0x47, 0x72, 0x6f, 0x75, 0x70, 0x52, 0x0a, 0x72, 0x65, 0x61, 0x64, 0x47,
   181  	0x72, 0x6f, 0x75, 0x70, 0x73, 0x12, 0x3e, 0x0a, 0x04, 0x69, 0x6e, 0x66, 0x6f, 0x18, 0x07, 0x20,
   182  	0x03, 0x28, 0x0b, 0x32, 0x2a, 0x2e, 0x67, 0x6f, 0x6f, 0x67, 0x6c, 0x65, 0x2e, 0x67, 0x65, 0x6e,
   183  	0x6f, 0x6d, 0x69, 0x63, 0x73, 0x2e, 0x76, 0x31, 0x2e, 0x52, 0x65, 0x61, 0x64, 0x47, 0x72, 0x6f,
   184  	0x75, 0x70, 0x53, 0x65, 0x74, 0x2e, 0x49, 0x6e, 0x66, 0x6f, 0x45, 0x6e, 0x74, 0x72, 0x79, 0x52,
   185  	0x04, 0x69, 0x6e, 0x66, 0x6f, 0x1a, 0x53, 0x0a, 0x09, 0x49, 0x6e, 0x66, 0x6f, 0x45, 0x6e, 0x74,
   186  	0x72, 0x79, 0x12, 0x10, 0x0a, 0x03, 0x6b, 0x65, 0x79, 0x18, 0x01, 0x20, 0x01, 0x28, 0x09, 0x52,
   187  	0x03, 0x6b, 0x65, 0x79, 0x12, 0x30, 0x0a, 0x05, 0x76, 0x61, 0x6c, 0x75, 0x65, 0x18, 0x02, 0x20,
   188  	0x01, 0x28, 0x0b, 0x32, 0x1a, 0x2e, 0x67, 0x6f, 0x6f, 0x67, 0x6c, 0x65, 0x2e, 0x70, 0x72, 0x6f,
   189  	0x74, 0x6f, 0x62, 0x75, 0x66, 0x2e, 0x4c, 0x69, 0x73, 0x74, 0x56, 0x61, 0x6c, 0x75, 0x65, 0x52,
   190  	0x05, 0x76, 0x61, 0x6c, 0x75, 0x65, 0x3a, 0x02, 0x38, 0x01, 0x42, 0x6c, 0x0a, 0x16, 0x63, 0x6f,
   191  	0x6d, 0x2e, 0x67, 0x6f, 0x6f, 0x67, 0x6c, 0x65, 0x2e, 0x67, 0x65, 0x6e, 0x6f, 0x6d, 0x69, 0x63,
   192  	0x73, 0x2e, 0x76, 0x31, 0x42, 0x11, 0x52, 0x65, 0x61, 0x64, 0x47, 0x72, 0x6f, 0x75, 0x70, 0x53,
   193  	0x65, 0x74, 0x50, 0x72, 0x6f, 0x74, 0x6f, 0x50, 0x01, 0x5a, 0x3a, 0x67, 0x6f, 0x6f, 0x67, 0x6c,
   194  	0x65, 0x2e, 0x67, 0x6f, 0x6c, 0x61, 0x6e, 0x67, 0x2e, 0x6f, 0x72, 0x67, 0x2f, 0x67, 0x65, 0x6e,
   195  	0x70, 0x72, 0x6f, 0x74, 0x6f, 0x2f, 0x67, 0x6f, 0x6f, 0x67, 0x6c, 0x65, 0x61, 0x70, 0x69, 0x73,
   196  	0x2f, 0x67, 0x65, 0x6e, 0x6f, 0x6d, 0x69, 0x63, 0x73, 0x2f, 0x76, 0x31, 0x3b, 0x67, 0x65, 0x6e,
   197  	0x6f, 0x6d, 0x69, 0x63, 0x73, 0xf8, 0x01, 0x01, 0x62, 0x06, 0x70, 0x72, 0x6f, 0x74, 0x6f, 0x33,
   198  }
   199  
   200  var (
   201  	file_google_genomics_v1_readgroupset_proto_rawDescOnce sync.Once
   202  	file_google_genomics_v1_readgroupset_proto_rawDescData = file_google_genomics_v1_readgroupset_proto_rawDesc
   203  )
   204  
   205  func file_google_genomics_v1_readgroupset_proto_rawDescGZIP() []byte {
   206  	file_google_genomics_v1_readgroupset_proto_rawDescOnce.Do(func() {
   207  		file_google_genomics_v1_readgroupset_proto_rawDescData = protoimpl.X.CompressGZIP(file_google_genomics_v1_readgroupset_proto_rawDescData)
   208  	})
   209  	return file_google_genomics_v1_readgroupset_proto_rawDescData
   210  }
   211  
   212  var file_google_genomics_v1_readgroupset_proto_msgTypes = make([]protoimpl.MessageInfo, 2)
   213  var file_google_genomics_v1_readgroupset_proto_goTypes = []interface{}{
   214  	(*ReadGroupSet)(nil),       // 0: google.genomics.v1.ReadGroupSet
   215  	nil,                        // 1: google.genomics.v1.ReadGroupSet.InfoEntry
   216  	(*ReadGroup)(nil),          // 2: google.genomics.v1.ReadGroup
   217  	(*structpb.ListValue)(nil), // 3: google.protobuf.ListValue
   218  }
   219  var file_google_genomics_v1_readgroupset_proto_depIdxs = []int32{
   220  	2, // 0: google.genomics.v1.ReadGroupSet.read_groups:type_name -> google.genomics.v1.ReadGroup
   221  	1, // 1: google.genomics.v1.ReadGroupSet.info:type_name -> google.genomics.v1.ReadGroupSet.InfoEntry
   222  	3, // 2: google.genomics.v1.ReadGroupSet.InfoEntry.value:type_name -> google.protobuf.ListValue
   223  	3, // [3:3] is the sub-list for method output_type
   224  	3, // [3:3] is the sub-list for method input_type
   225  	3, // [3:3] is the sub-list for extension type_name
   226  	3, // [3:3] is the sub-list for extension extendee
   227  	0, // [0:3] is the sub-list for field type_name
   228  }
   229  
   230  func init() { file_google_genomics_v1_readgroupset_proto_init() }
   231  func file_google_genomics_v1_readgroupset_proto_init() {
   232  	if File_google_genomics_v1_readgroupset_proto != nil {
   233  		return
   234  	}
   235  	file_google_genomics_v1_readgroup_proto_init()
   236  	if !protoimpl.UnsafeEnabled {
   237  		file_google_genomics_v1_readgroupset_proto_msgTypes[0].Exporter = func(v interface{}, i int) interface{} {
   238  			switch v := v.(*ReadGroupSet); i {
   239  			case 0:
   240  				return &v.state
   241  			case 1:
   242  				return &v.sizeCache
   243  			case 2:
   244  				return &v.unknownFields
   245  			default:
   246  				return nil
   247  			}
   248  		}
   249  	}
   250  	type x struct{}
   251  	out := protoimpl.TypeBuilder{
   252  		File: protoimpl.DescBuilder{
   253  			GoPackagePath: reflect.TypeOf(x{}).PkgPath(),
   254  			RawDescriptor: file_google_genomics_v1_readgroupset_proto_rawDesc,
   255  			NumEnums:      0,
   256  			NumMessages:   2,
   257  			NumExtensions: 0,
   258  			NumServices:   0,
   259  		},
   260  		GoTypes:           file_google_genomics_v1_readgroupset_proto_goTypes,
   261  		DependencyIndexes: file_google_genomics_v1_readgroupset_proto_depIdxs,
   262  		MessageInfos:      file_google_genomics_v1_readgroupset_proto_msgTypes,
   263  	}.Build()
   264  	File_google_genomics_v1_readgroupset_proto = out.File
   265  	file_google_genomics_v1_readgroupset_proto_rawDesc = nil
   266  	file_google_genomics_v1_readgroupset_proto_goTypes = nil
   267  	file_google_genomics_v1_readgroupset_proto_depIdxs = nil
   268  }
   269
View as plain text